ABSTRACT
Background: It is estimated that about 600?000 children die annually as a result of severe dehydrating diarrhea caused by rotaviruses. The virus is a double stranded RNA (dsRNA) virus with 11 segments. Group A rotaviruses show a characteristic 4-2-3-2 pattern following electrophoresis. The VP6 subgroups; I and II exist. This work was carried out to study the prevalence of rotavirus infection among children 0-5 years with diarrhea in Kano; and to determine the circulating subgroups and electropherotypes and of the rotavirus isolates. Methods: Two hundred and eighteen stool specimens from children 0-60 months (198 diarrheic and 20 non-diarrheic) were collected from different hospitals and health care centers in Kano and subjected to group A rotavirus enzyme linked immunosorbent assay (ELISA) to determine presence of group A rotavirus; subgroup ELISA to determine the VP6 subgroups and polyacrylamide gel electrophoresis (PAGE) to determine the electropherotypes present. Results: The long electropherotypes (47.05) of four variations dominated over the short electropherotype (17.64). About 11.76of the isolates were of mixed infection. Dominance of subgroup II (45) over subgroup I (25); and the presence of both subgroups I and II (10) and neither subgroup I nor II (15) was observed in this study. Conclusion: Information on the genomic diversity of the RNA electropherotypes in this region; Kano; is reported in this study