ABSTRACT
Whole-genome resequencing provides the opportunity to explore the genomic variations and pave way for further functional assays to map the economical trait loci. In this study, we sequenced the genomes of mixed chicken samples from a full-sib family, with feathered and unfeathered legs at an average effective depth of 4.43×, using Illumina Hiseq 2000 instruments. Over 2.1 million nonredundant short indels (1–71 bp) were obtained. Among them, 16,375 common indels that were polymorphic between the comparison groups were revealed for further analysis. The majority of the common differential indels (76.52%) were novel. Follow-up validation assays confirmed that 80% randomly selected indels represented true variations. The indels were annotated based on the chicken genome sequence assembly. As a result, 16,375 indels were found to be located within 2756 annotated genes, with only 33 (0.202%) located in exons. By integrated analysis of the 2756 genes with gene function and known quantitative trait loci, we identified a total of 24 promising candidate genes potentially affecting feathered-leg trait, i.e. FGF1, FGF4, FGF10, FGFR1, FRZB, WNT1, WNT3A, WNT11, PCDH1, PCDH10, PCDH19, SOX3, BMP2, NOTCH2, TGF-β2, DLX5, REPS2, SCN3B, TCF20, FGF3, FSTL1, WNT7B, ELOVL2 and FGF8. Our findings provide a basis for further study and reveal key genes for feathered-leg trait in chickens.
ABSTRACT
This study examined the association of pregnancy with urolithiasis and provided new insights into urolithiasis in pregnancy.A total of 462 subjects were studied from January 2004 to December 2009 in Foshan Maternal and Child Health Hospital,China.Among the 462 subjects,162 cases of urolithiasis during pregnancy (UPG) were selected as the observation group,150 cases of no urolithiasis during pregnancy (NUPG) served as pregnancy control group,and 150 cases of no pregnancy (NPG) at reproductive age who took part in physical examination were randomly assigned into non-pregnant control group.At the same time,the patients in observation group were divided into the following sub-groups:no symptomatic urinary calculus (NSUC) and symptomatic urinary calculus (SUC) groups;SUC group was further divided into surgical intervention (SI) and conservative management (CM) groups.The general information and the data of blood and urine were collected and compared among the groups.The results showed that the incidence of urinary calculi in pregnant women was lower than that in non-pregnant women,the formation of urinary stone was associated with the change of metabolism of protein and sugar in pregnant women,and the surgical intervention was a practicable alternative to treat the clinical intractable symptomatic urinary calculi in pregnancy.