Identification of suitable mungbean genotypes for hilly terrains of India using GGE and AMMI biplot approaches

Aim: The present investigation was conducted to approximate the magnitude of genotype × environment interaction effects in mungbean crop and to identify suitable genotypes for northern hilly terrain of India. Methodology: Thirty one promising mungbean genotypes were evaluated in three diverse environments, viz., Srinagar, Berthin and Imphal of northern hilly terrains of India. The individual genotype was planted in 5 rows of 4m length in 3 replications in randomized block design. The statistical analysis was done for Additive Main effect and Multiplicative Interaction (AMMI) and genotype main effect plus genotype-by-environment interaction (GGE) biplots analysis. Results: ANOVA devised that the genotypes, environment and genotype × environment interactions were significant for grain yield. The first two principal components, PC1 and PC2 described 73.65 and 26.35 percent variations, respectively, of total variation. According to AMMI I, the genotypes such as Pant M 6, RMG 1092, TMB 134, CoGG 13-19, KM 2349, DGG-8, TRCM 87-6-2-1, KM 2241 and MDGGv-16 were highly stable genotypes. GGE biplot analysis revealed that Pant M 6 and TMB 134 as winning genotypes for Berthin while NMK 15-12 and MDGGV-16 were the best genotypes for Srinagar. The genotypes IPM 14-7 and GAM 5 were found best for Imphal. Overall, high yield and most stable genotype was DGG-8 for northern hilly terrains of India. Interpretation: GGE biplot and AMMI approach could be instrumental in appraising the genotypes performance in multi-environments/locations testing for efficient selection of the stable genotypes.

Molecular docking of various bioactive compounds from essential oil of Trachyaspermum ammi against the fungal enzyme Candidapepsin-1

The bioactive compounds from essential oil of Trachyaspermum ammi using gas chromatography–mass spectrometryand their inhibition potential against the enzyme Candidapepsin-1 were studied. The research work focuses on themolecular simulation of bioactive compounds against the enzyme that acts as a potential drug target and support thedrug discovery process. Candidapepsin-1 has been reported to be the cause for biofilm formation, superficial skininfections, and oral infections. Fifteen active compounds and their interactions with Candidapepsin-1 were studiedin this research work. The compounds satisfied Lipinski’s rule of five in order to be used as an oral drug. ADMETproperties of the compounds used to determine pharmacodynamic and pharmacokinetic properties which werereported in the study. The compounds were docked against the enzyme with the help of AutoDock 4.2.6 software.Ligustilide has the lowest free binding energy of −5.75 kcal/mol against the Candidapepsin-1 with three hydrogenbond interactions at Ile 223, Tyr 225, and Thr 222 at the active site of the enzyme followed by cedrane with −5.20kcal/mol. The hydrogen bond interactions, Vander Waals interactions, and two-dimensional and three-dimensionalinteractions were studied.

In Vitro Susceptibility Of Isolated Shigella Flexneri And Shigella Dysenteriae To The Ethanolic Extracts Of Trachyspermum Ammi And Peganum Harmala

Objective: This study represents the first attempt to investigate the antimicrobial activity of Peganum harmala, and Trachyspermum ammi seeds extract against the isolated bacillary dysentery-causing microorganisms. Methods: T. ammi and P. harmala were extracted by 96% ethanol using Soxhlet apparatus. The extracts were screened for their phytochemical constituents. Their antimicrobial activity against the isolated dysentery-causing microorganisms was evaluated using the agar diffusion method. Results: The antimicrobial activity result showed that, the two isolated bacteria, Shigella flexneri, and Shigella dysenteriae were found to be sensitive to the extract of T. ammi seed with inhibition zones up to 25 mm, compared to the inhibition zone of 20 mm produced by Gentamycin standard drug, this is mainly due to the presence of the different phytochemical in the extract such as tannin, flavonoids, terpenoids which are well known for their antimicrobial effects. The two isolated bacteria were found to be insensitive (zero mm) to P. harmala extract, Amoxicillin, and Amoclan (Amoxicillin+clavulanic acid) standard drugs, this is due to the fact that, the phytochemicals constituents of P. harmala possess the antagonistic effect to each other’s. Addition to; these bacteria became resistant to both Amoxicillin and Amoclan. Conclusion: From the results it concludes, T. ammi seeds extract had a considerable level of antimicrobial activity against bacillary dysentery-causing microorganisms resistant to Amoxicillin and Amoxicillin+clavulanic acid drugs.

Stereological assessment of nephroprotective effects of Trachyspermum ammi essential oil against carbon tetrachloride-induced nephrotoxicity in mice / Evaluación estereológica de los efectos nefroprotectores del aceite esencial de Trachyspermum ammi contra la nefrotoxicidad inducida por tetracloruro de carbono en ratones

Trachyspermum ammi (T. ammi) has been used in folk medicine as anti-inflammatory, antipyretic, antibacterial, antifungal agent. The present study was conducted to investigate the protective effect of Trachyspermum ammi (T. ammi) essential oil against CC14- induced nephrotoxicity in mice. Thirty-five mice were divided into five groups as follows; positive control received olive oil 1 mL/ kg/ip, negative control received CC14 1 mg/kg/ip + 0.5 mL distilled water orally and tree treatment groups which received CC14 similar to the negative control and 200, 800 and 1600 µg/kg of T. ammi essential oil, respectively. All treatments were done twice a week (Saturday and Wednesday) for 45 days. On the last day, blood was sampled for urea and creatinine assessment and the left kidney was removed for stereological estimations. Essential oil of T. ammi at high dose significantly (p ≤ 0.05) decreased serum levels of creatinine and urea in comparison with CC14-treated group. Total volume of the kidney, cortex, proximal convoluted tubules (PC), glomerulus, vessels and interstitial tissue as well as total length of PC and vessel were significantly (p ≤ 0.05) increased following CC14 administration and were restored toward normal levels at high dose of T. ammi. Also, high dose of T. ammi improved glomerular loss significantly (p ≤ 0.05) as compared with CC14-treated group. Due to the chemical composition of T. ammi essential oil such as tymol, p-cymene, γ-terpinene which are antioxidant, it can be concluded that the essential oil of T. ammi can ameliorated renal injury induced following CC14 toxicity via its antioxidant components.

En la medicina popular se ha utilizado el aceite esencial de Trachyspermum ammi (T. ammi) como agente antiinflamatorio, antipirético, antibacteriano y anti fúngico. El presente estudio se realizó para investigar el efecto protector de Trachyspermum ammi (T. ammi) aceite esencial contra la nefrotoxicidad inducida en ratones. Treinta y cinco ratones fueron divididos en cinco grupos de la siguiente manera; el control positivo recibió 1 mL / kg / ip de aceite de oliva, el control negativo recibió 1 mg / kg / ip + 0,5 mL de agua destilada por vía oral y grupos de tratamiento arbóreo que recibieron un control similar al negativo y 200, 800 y 1600 mg / kg de T. aceite esencial de T. ammi, respectivamente. Todos los tratamientos se realizaron dos veces por semana (sábado y miércoles) durante 45 días. En el último día de tratamiento, se tomaron muestras de sangre para evaluar la urea y la creatinina, y se extrajo el riñón izquierdo para realizar estimaciones estereológicas. El aceite esencial de T. ammi a dosis altas significativamente (p ≤ 0,05) disminuyó los niveles séricos de creatinina y urea en comparación con el grupo tratado. El volumen total del riñón, la corteza, los túbulos contorneados proximales (PC), el glomérulo, los vasos y el tejido intersticial, así como la longitud total de la PC y el vaso aumentaron significativamente (p ≤ 0,05) después de la administración y se restablecieron a niveles normales con dosis altas de T. ammi. Además, una dosis alta de T. ammi mejoró significativamente la pérdida glomerular (p ≤ 0,05) en comparación con el grupo tratado. Debido a la composición química del aceite esencial de T. ammi como timol, p-cimeno, 𝛾-terpineno con propiedades antioxidantes, se puede concluir que el aceite esencial de T. ammi puede mejorar la lesión renal inducida después de la toxicidad a través de sus componentes antioxidantes.

Monoterpene isolated from the essential oil of Trachyspermum ammi is cytotoxic to multidrug-resistant Pseudomonas aeruginosa and Staphylococcus aureus strains

Abstract INTRODUCTION: The aim of this study was to determine whether an herbal extract containing monoterpene exhibited activity against multidrug-resistant Staphylococcus aureus and Pseudomonas aeruginosa isolated from clinical infection samples. METHODS: The essential oil of Trachyspermum ammi (L.) Sprague ex Turrill (Apiaceae) fruit was extracted by hydrodistillation. Fruit residues were treated with hydrochloric acid and re-hydrodistilled to obtain volatile compounds. Compounds in the distilled oil were identified using gas-chromatography (GC) and GC-mass spectrometry (MS). The antibiotic susceptibility of all bacterial isolates was analyzed using both the disc diffusion method and determination of the minimum inhibitory concentration (MIC). The sensitivity of antibiotic-resistant isolates to essential oil was also determined by using the disc diffusion method and MIC determination. RESULTS: Of 26 clinical isolates, 92% were multidrug-resistant (MDR). Aromatic monoterpenes (thymol, paracymene, and gamma-terpinene) were the major (90%) components of the oil. Growth of S. aureus strains was successfully inhibited by the oil, with an inhibitory zone diameter (IZD) between 30-60mm and MIC <0.02μL/mL. The oil had no antimicrobial activity against clinical isolates of P. aeruginosa; rather, it prevented pigment production in these isolates. CONCLUSIONS: This study revealed that the essential oil of Trachyspermum ammi, which contains monoterpene, has good antibacterial potency. Monoterpenes could thus be incorporated into antimicrobial ointment formulas in order to treat highly drug-resistant S. aureus infections. Our findings also underscore the utility of research on natural products in order to combat bacterial multidrug resistance.

Assessment of Yield Stability and Adaptability of Parental Inbred Lines and F1- Hybrids of Grain Maize (Zea mays L.) Using AMMI Analysis.

This study was carried out to identify the yield stability and adaptability of the grain maize genotypes (parental inbred lines, F1-hybrids and check varieties), using Additive Main Effects and Multiplicative Interaction (AMMI). A field experiment was executed during the winter and summer seasons of 2009 and 2010 at two locations, Shambat and Elrawakeeb, Sudan. A split-plot design with three replications was used to layout the experiment. The inbred lines and their F1-hybrids were evaluated in the field under normal irrigation and water-stress conditions. The results showed that, highly significant differences were detected among genotypes, environments and for G×E interaction, indicated differential performance of genotypes over environments. Considering mean grain yield, and the Linear Regression parameters bi and S2d values jointly, the F1-hybrids 160×2, 160×3 and 6×3 gave above average mean of grain yield/ha and were most stable for grain yield/ha. AMMI analysis differentiated the genotypes (parental inbred lines and F1-hybrids), based on their grain yield, into different adaptation pattern and stability. Based on AMMI analysis, the F1- hybrids 66y×6 and 6×3 were highly stable with considerable high yield and adapted to favorable environments. However, the F1- hybrids 160×66y and 160×3 exhibited the highest mean grain yield/ha (4.1 tons and 3.5 tons, respectively), with slightly low interaction scores, hence they are regarded as superior hybrids.

A panoramic view on phytochemical, nutritional, ethanobotanical uses and pharmacological values of Trachyspermum ammi Linn

Trachyspermum ammi Linn. (T. ammi) is an aromatic, grassy, annual plant belonging to Umbelliferae family which grows in the east of India, Pakistan, Iran, and Egypt. T. ammi has been used traditionally to treat arthritis, colic, diarrhea and gastrointestinal problems. In addition to these medicinal uses, T. ammi continues to be valued around the world as an important cooking spice and is believed to relief the common cold, flu-like symptoms, headaches, and even painful menstrual periods. These multiple uses can be explained by its several active compounds. The phytochemical studies on T. ammi seeds have revealed the presence of alkaloids, steroids, fixed oils, glycosides, tannins, saponin and flavonoids, cumene, thymene, amino acids and dietary fiber essential oils like thymol, c-terpinene, p-cymene. Several pharmacological studies on anti-tussive effect, inhibitory effect on histamine (H1) receptors, antihypertensive, antispasmodic, bronchodilator, hepato-protective, analgesic, anti-inflammatory, antioxidant and anti mutagenic activities of T. ammi seed extracts have been reported in the literature. The present review is therefore, an effort to give a detailed survey of the literature on traditional, phytochemical and pharmacological properties of T. ammi.

Análises Biplot: conceitos, interpretações e aplicações / Biplot analysis: concepts, interpretations and uses

A seleção e recomendação de genótipos superiores são dificultadas devido à ocorrência da interação genótipo e ambiente. Nesse contexto, as análises biplot têm sido cada vez mais utilizadas na análise de dados agronômicos, com interações de natureza complexa. Entretanto, as particularidades existentes no gráfico biplot dificultam sua interpretação, podendo induzir o pesquisador a erros. Assim, este artigo de revisão discute a aplicabilidade e a interpretação gráfica dos modelos AMMI (Additive Main effects and Multiplicative Interaction) e GGE biplot (genotype main effects + genotype environment interaction) destas análises no gráfico biplot. Também, visa a desmistificar a necessidade de comparação entre ambas as metodologias. Discute-se quanto à escolha da metodologia mais adequada, levando em consideração a informação requerida e os objetivos do pesquisador.

The genotype environment interaction (GE) influences on the selection and recommendation of cultivars. Biplot analysis has been increasingly used in data analysis of complex traits in agriculture. However, the peculiarities of biplot graphic could induce the researcher to errors on interpretation. Thus, this review argues the applicability and graphic interpretation of models AMMI (Additive Main Effects and Multiplicative Interaction) and GGE biplot (genotype main effects + genotype environment interaction). Moreover, also aims to explain that it is not adequate to compare both statistical methods. It is discussed the best methodology considering the information required and the research objectives.

Phenotypic stability of hybrids of Gália melon in Rio Grande do Norte state, Brazil

The objectives of this study were to determine the importance of simple and complex components of the interaction genotype × environment and to evaluate the adaptability and stability of Gália melon hybrids. Nine hybrids were tested in twelve environments of Rio Grande Norte State from 2000 to 2001. The experiments were carried out in a randomized complete block design with three replications. The statistical methods of Toler and Burrows, Wricke and AMMI (Additive Main effect and Multiplicative Interaction) were used to study the adaptability and stability. The complex component is responsible for most of the genotype × environment interaction for the yield and content of solids soluble of fruits. The environments associated with Mossoró and Assu municipalities are the most suitable to evaluate melon hybrids in the state. The hybrid DRG 1537 was the most likely to be grown in the Agro-industrial Complex Mossoró-Assu due to its stability, high productivity and high content of soluble solids.

Os objetivos deste estudo foram determinar a importância das componentes simples e complexa da interação genótipo × ambiente e avaliar a adaptabilidade e estabilidade de híbridos de melão Gália. Nove híbridos foram testados em doze ambientes do Estado do Rio Grande Norte no período de 2000 a2001. Os experimentos foram conduzidos em blocos completos casualizados com três repetições. Os métodos estatísticos de Toler e Burrows, Wricke e AMMI (Additive Main effect and Multiplicative Interaction) foram usados para estudar a adaptabilidade e estabilidade. A componente complexa é responsável pela maior parte da interação genótipo × ambiente para a produtividade e teor de sólidos solúveis dos frutos. Os ambientes associados com Mossoró e Assu são os mais adequados para a avaliação de melão híbrido. O híbrido DRG1537 é o mais promissor para o cultivo no Complexo Agro-industrial Mossoró-Assu, devido à sua estabilidade, alta produtividade e alto teor de sólidos solúveis.

Plant stature of aromatic rice genotypes in the environment of Bangladesh.

Plant stature of a rice crop is an important selection criterion. As plant height is a quantitative trait it is influenced by environmental conditions. A field experiment was conducted with 40 rice genotypes to assess the fluctuation and stability of plant height in a series of 16 environmental situations. The effects of genotype (G), environment (E) and all the components of G×E interaction were highly significant. Among the genotypes, Jamai sohagi was extremely sensitive (bi = 1.37) to environmental changes, and indicating lowest adaptability over the environments. Plant height of seven genotypes viz. Basmati PNR346, Benaful, BRRIdhan28, BRRIdhan38, BRRIdhan39, Gandho kasturi and Neimat, having the bi values between 0.59 and 0.72, showed high stability against environmental changes. The other seven genotypes viz. Badshabhog, Basmati Tapl-90, Kamini soru, Khazar, Laljira, Sarwati and Ukni madhu expressed only nonlinear sensitivity (S2 di = 90 – 181)) and thus unpredictable fluctuation. Twenty one genotypes indicated their average stability (bi = 0.91 -1.15) over the environments.

Isolation and identification of salmonella from curry samples and its sensitivity to commercial antibiotics and aqueous extracts of Camelia sinensis (L.) and Trachyspermum ammi (L.)

<p><b>OBJECTIVE</b>To isolate Salmonella from curry samples and to evaluate the drug sensitivity of the food-borne Salmonella and its susceptibility to specific plant extracts.</p><p><b>METHODS</b>Salmonella was isolated from the curry samples by standard microbiological methods and was confirmed by biochemical tests. The antibiotic susceptibility test was conducted by disc diffusion method using commercially available antibiotics such as ampicillin, tetracycline, chloramphenicol, kanamycin, and penicillin. In addition, the susceptibility of the food-borne Salmonella was also evaluated against the aqueous extracts of Camelia sinensis (L.) Theaceae (tea leaves) and the Trachyspermum ammi (L.) Apiaceae ( ajwain or omum seeds).</p><p><b>RESULTS</b>Out of fifty curry samples, only seven samples were identified to have Salmonella contamination. The Salmonella isolates showed a significant drug resistance pattern except for kanamycin. The plant extracts showed a considerable antibacterial activity against the isolates, indicating the presence of antimicrobial principle which can be exploited after complete pharmacological investigations.</p><p><b>CONCLUSIONS</b>The present study demonstrates the occurrence of Salmonella in the curry samples, and shows significant drug resistance against most of the commercially available antibiotics, except kanamycin. Antimicrobial effect of the plant extracts against the food-bone Salmonella suggests that dietary including medicinal herbs would be one strategy to manage food borne pathogens.</p>

Isolation and identification of Salmonella from curry samples and its sensitivity to commercial antibiotics and aqueous extracts of Camelia sinensis (L.) and Trachyspermum ammi (L.)

Objective: To isolate Salmonella from curry samples and to evaluate the drug sensitivity of the food-borne Salmonella and its susceptibility to specific plant extracts. Methods: Salmonella was isolated from the curry samples by standard microbiological methods and was confirmed by biochemical tests. The antibiotic susceptibility test was conducted by disc diffusion method using commercially available antibiotics such as ampicillin, tetracycline, chloramphenicol, kanamycin, and penicillin. In addition, the susceptibility of the food-borne Salmonella was also evaluated against the aqueous extracts of Camelia sinensis (L.) Theaceae (tea leaves) and the Trachyspermum ammi (L.) Apiaceae ( ajwain or omum seeds). Results: Out of fifty curry samples, only seven samples were identified to have Salmonella contamination. The Salmonella isolates showed a significant drug resistance pattern except for kanamycin. The plant extracts showed a considerable antibacterial activity against the isolates, indicating the presence of antimicrobial principle which can be exploited after complete pharmacological investigations. Conclusions:The present study demonstrates the occurrence of Salmonella in the curry samples, and shows significant drug resistance against most of the commercially available antibiotics, except kanamycin. Antimicrobial effect of the plant extracts against the food-bone Salmonella suggests that dietary including medicinal herbs would be one strategy to manage food borne pathogens.

Comparison of methods for phenotypic stability analysis of cassava (Manihot esculenta Crantz) genotypes for yield and storage root dry matter content

The objective of this work was to compare different phenotypic stability methods by using yield and storage root dry matter content data of eight cassava genotypes, assessed in eight environments in northwest of Paraná State, Brazil. All the methodologies applied showed to be able to study the stability of cassava genotypes, but each with its peculiarities. The methodologies of Eskridge, Annicchiarico and Lin and Binns were the most appropriated on situation with smaller effect of G x E interaction. The AMMI analysis and the Toler and Burrows methodology were the most specific on detailing specific adaptations of cassava genotypes to favorable and unfavorable environments. It could be suggested to use simultaneous AMMI analysis and Toler and Burrows methodology. The clone IAC 190-89 was the most promising.

O objetivo deste trabalho foi comparar diferentes metodologias de análise de estabilidade fenotípica considerando produção e teor de matéria seca nas raízes tuberosas de oito genótipos de mandioca, avaliados em oito ambientes na região Noroeste do Paraná. Todas as metodologias aplicadas se mostraram aptas no estudo da estabilidade dos genótipos avaliados, cada uma delas com suas particularidades. As metodologias de Eskridge, Annicchiarico e Lin e Binns se mostraram mais adequadas para situações de menor efeito da interação G x A. A análise AMMI e a metodologia de Toler e Burrows propiciaram um melhor detalhamento das adaptações específicas dos genótipos a ambientes favoráveis e desaforáveis. É sugerido o uso simultâneo da análise AMMI e da metodologia de Toler e Burrows. O clone IAC 190-89 mostrou-se mais promissor.