DNA Analysis of Ralstonia solanacearum Based on 270-bp PCR-amplified Fragment from the Lowlands and Highlands of Kenya

Aims: Bacterial wilt, caused by Ralstonia solanacearum, is a devastating disease resulting in tremendous losses of economic crops such as plants in the Solanaceae. Studies have shown that R. solanacearum is spreading from the lowlands to the highlands. This has seen increased need for understanding the genetic diversity of R. solanacerum strains common in these areas as a basis for better strategies in their control. Methodology: Sixty-nine bacteria isolates obtained from various wilting plant hosts (Tomato, capsicum and potato) from 11 different sites in Nyeri, Nyahururu, Kirinyaga, Kiambu, Nakuru Murang’a and Embu were subjected to molecular analysis. Results: All the bacteria isolates were confirmed to be R. solacearum following PCR amplification of about 270-bp fragment using specific primers OLI 1-F and Y2-R. Based on the targeted 16 S rDNA sequences using primers OLI 1 and Y2, the 69 bacteria isolates had 98 to 100% identity with other DNA sequences for R. solanacearum isolates deposited in the NCBI database. Analysis of genetic differentiation showed there were total of 26 haplotypes from the 11 studied populations. The total number of segregating sites in all populations was 225. Conclusion: Through this study, it was realized that the main causative agent of bacterial wilt in potatoes, tomatoes and capsicum grown in the lowland and highland regions in Kenya is R. solanacearum. The isolates are in two main groups (Cluster A and B) that represent mainly the phylotypes I and II respectively.

Occurrence and diversity of Ralstonia solanacearum populations in Brazil / Ocorrência e diversidade de populações de Ralstonia solanacearum no Brasil

Ralstonia solanacearum is a gram-negative soil-borne bacterium capable of infection of hundreds of vegetable species over more than 50 botanical families, causing bacterial wilt, except for bananas, when the disease is called Moko. It deserves special attention, from all other plant pathogenic bacteria, for its high phenotypic and genotypic plasticity, a characteristic that makes disease control extremely difficult. In this context, frequent and necessary surveys are conduct in the attempt of characterizing the prevailing strains of R. solanacearum in each region where the disease has been reported. However, knowledge about occurrence and diversity of R. solanacearum in Brazil is fragmented and in some cases, based on inconclusive studies with few strains, little representative of a given region. The need to obtain a greater picture guided this review. The occurrence of this bacterium in Brazilian States and the possible causes for its dissemination are presented, with emphasis on studies of genetic variability of populations of R. solanacearum in the country. The compiled results report a wide distribution of the bacterium in Brazil and great variability of its populations among locations. Partly due to the difficulty of detecting small titer of bacteria in samples, paucity of information about the origin of inoculum in certain regions is observed, as well as the need for detecting the presence of the pathogen in asymptomatic plants, potato tubers with latent infections, soil, and water, which are the major causes of bacterial dissemination into areas without any disease history.

Ralstonia solanacearum é uma bactéria gram-negativa habitante do solo capaz de infectar centenas de espécies vegetais distribuídas em mais de 50 famílias botânicas, onde causa a murcha-bacteriana, exceto na bananeira, na qual recebe o nome de Moko. Destaca-se entre outras bactérias fitopatogênicas pela sua alta plasticidade fenotípica e genotípica, característica que contribui sobremaneira para dificultar o controle da doença. Nesse contexto, levantamentos frequentes e necessários são conduzidos na tentativa de caracterizar isolados de R. solanacearum prevalentes em cada região onde a doença tem sido relatada. No Brasil, o conhecimento sobre a ocorrência e a variabilidade de R. solanacearum está fragmentado e, em alguns casos, baseado em estudos inconclusivos pelo uso de amostras de isolados pouco representativas de uma região. A necessidade de agrupar essas informações norteou a presente revisão de literatura. A ocorrência da bactéria nos Estados brasileiros e as possíveis causas de sua disseminação são apresentadas, com ênfase nos estudos da variabilidade genética das populações de R. solanacearum no país de acordo com o atual esquema de classificação da bactéria. Os resultados de pesquisa compilados da literatura reportam ampla distribuição da bactéria no Brasil e grande variabilidade de suas populações entre locais. Em parte devido à dificuldade de detectar pequenos números de células bacterianas em amostras, nota-se escassez de informações sobre a origem do inóculo em determinadas regiões, bem como a necessidade de detectar a presença do patógeno em plantas assintomáticas, em tubérculos de batata com infecções latentes, no solo e na água, que são as principais causas da disseminação da bactéria para áreas sem histórico da doença.

Evaluación del gen que codifica la enzima βHPMEH para la inhibición de la marchitez bacteriana causada por Ralstonia solanacearum

La marchitez bacteriana causada por Ralstonia solanacearum E.F. Smith es una de las enfermedades bacterianas más importantes que ataca a cultivos agrícolas como papa, tomate, banana, entre otros, causando grandes pérdidas en la producción. Desafortunadamente, su control ha sido difícil por su amplio rango de hospederos alternativos, su supervivencia en el suelo y su variación biológica y genética; así como porque no hay variedades con altos niveles de resistencia y porque no existe un control químico efectivo. Quorum sensing (percepción de quorum) es el fenómeno mediante el cual la acumulación de unas moléculas permite a una bacteria saber el número de bacterias que se encuentran en el medio es decir la densidad poblacional. La bacteria R. solanacearum posee un sistema quorum sensing para la regulación de la expresión de genes de virulencia, y en la cual la molécula 3-OH-PAME es el autoregulador de esta señal. Se conoce que la molécula ΒHPMEH hidroliza a 3-OH-PAME, anulando así la señal de autorregulación y por tanto la comunicación quorum sensing en R. solanacearum. Con el objetivo de evaluar el gen βhpmeh, se diseñaron dos vectores que expresen este gen bajo el control de dos diferentes promotores, los cuales fueron verificados por análisis de restricción, secuenciamiento y posteriormente mediante técnicas de agroinfiltración, se observó su expresión y su efecto frente a R. solanacearum en hojas de papa de la variedad Desiree. Los resultados de la expresión transitoria, muestran que el gen βhpmeh retrasó la aparición de síntomas de la marchitez bacteriana y sería un candidato potencial para transformación genética de la planta entera.

Ralstonia solanacearum is the causal agent of the devastating bacterial wilt disease that attacks important agricultural crops such as potato, tomato, banana, among others, causing serious yield losses. Control of R. solanacearum is difficult because of its wide range of alternate hosts, its long survival in soil, its biological and genetic variation, the lack of natural resistance sources and the insufficiency of the appropriate chemical control measures. Quorum sensing is the term that describes the phenomenon whereby the accumulation of molecules allows bacteria to know the number of bacteria found in the environment (population density). R. solanacearum has a quorum sensing system for the regulation of the expression of virulence genes; the molecule 3-OH-PAME is the self-regulatory signal. The molecule ΒHPMEH hydrolyzes 3-OH-PAME nullifying the signal of virulence, and thus, the quorum sensing communication in R. solanacearum. In order to evaluate the βhpmeh gene we designed two vectors that express this gene under the control of two different promoters. Both vectors were verified by restriction analysis and sequencing. Agroinfiltration assays were used to analyze gene expression and the effect against R. solanacearum in potato (Solanum tuberosum) leaves. The results of the transient expression experiments showed that the expression of gene βhpmeh caused a delay in the appearance of symptoms of bacterial wilt and thus is a good candidate for whole genetic plant transformation.

Water Extract from Spent Mushroom Substrate of Hericium erinaceus Suppresses Bacterial Wilt Disease of Tomato

Culture filtrates of six different edible mushroom species were screened for antimicrobial activity against tomato wilt bacteria Ralstonia solanacearum B3. Hericium erinaceus, Lentinula edodes (Sanjo 701), Grifola frondosa, and Hypsizygus marmoreus showed antibacterial activity against the bacteria. Water, n-butanol, and ethyl acetate extracts of spent mushroom substrate (SMS) of H. erinaceus exhibited high antibacterial activity against different phytopathogenic bacteria: Pectobacterium carotovorum subsp. carotovorum, Agrobacterium tumefaciens, R. solanacearum, Xanthomonas oryzae pv. oryzae, X. campestris pv. campestris, X. axonopodis pv. vesicatoria, X. axonopodis pv. citiri, and X. axonopodis pv. glycine. Quantitative real-time PCR revealed that water extracts of SMS (WESMS) of H. erinaceus induced expressions of plant defense genes encoding beta-1,3-glucanase (GluA) and pathogenesis-related protein-1a (PR-1a), associated with systemic acquired resistance. Furthermore, WESMS also suppressed tomato wilt disease caused by R. solanacearum by 85% in seedlings and promoted growth (height, leaf number, and fresh weight of the root and shoot) of tomato plants. These findings suggest the WESMS of H. erinaceus has the potential to suppress bacterial wilt disease of tomato through multiple effects including antibacterial activity, plant growth promotion, and defense gene induction.

Virulência de estirpes (biovar 1 e 2T) de Ralstonia solanaceraum a Eucalyptus spp. / Virulence of Ralstonia solanacearum strains (biovar 1 and 2T) to Eucalyptus spp.

A murcha bacteriana do eucalipto (Raça 3 biovar 2T de Ralstonia solanacearum) foi descrita em 2009 em campo com o híbrido de eucalipto urograndis. O objetivo deste trabalho foi avaliar a virulência de duas estirpes de R. solanacearum a dezessete espécies de Eucalyptus, através do teste de microbiolização de sementes. A análise estatística dentre espécies mostrou que a virulência variou entre as estirpes estudadas. A virulência da R3bv2T foi significativamente maior em: urograndis, E. urophylla, E. grandis x E. camaldulensis, E. grandis, E. microcorys, E. deanei e E. phaeotricha; e maior para R1bv1 somente na espécie E. pellita. Entre espécies de eucalipto, observou-se maior suscetibilidade em "urograndis", E. grandis e E. paniculata para R3bv2T; e em E. cloeziana, E. paniculata, E. botryoides, E. pellita, E. propinqua e E. resinifera devido a R1bv1.

The bacterial wilt of Eucalyptus (Ralstonia solanacearum Race 3 biovar 2T) was reported in field of Eucalyptus hybrid urograndis. The objective of this research was to evaluate the virulence of two R. solanacearum strains to 17 Eucalyptus species, using the seed microbiolization method for pathogen inoculation. The results of the statistical analyses showed that virulence varied between the two R. solanacearum strains. The R3bv2T virulence was higher than the one in R1bv1 in the following Eucalyptus species: urograndis, E. urophylla, E. grandis x E. camaldulensis, E. grandis, E. microcorys, E. deanei, and E. phaeotricha. The virulence of the R1bv1 strain was higher only in E. pellita. Among species of Eucalyptus the following ones were more susceptibles: to R3bv2T strain - urograndis, E. grandis and E. paniculata, and to R1bv1 strain - E. cloeziana, E. paniculata, E. botryoides, E. pellita, E. propinqua and E. resinifera.

A unique DNA repair and recombination gene (recN) sequence for identification and intraspecific molecular typing of bacterial wilt pathogen Ralstonia solanacearum and its comparative analysis with ribosomal DNA sequences.

Ribosomal gene sequences are a popular choice for identification of bacterial species and, often, for making phylogenetic interpretations. Although very popular, the sequences of 16S rDNA and 16-23S intergenic sequences often fail to differentiate closely related species of bacteria. The availability of complete genome sequences of bacteria, in the recent years, has accelerated the search for new genome targets for phylogenetic interpretations. The recently published full genome data of nine strains of R. solanacearum, which causes bacterial wilt of crop plants, has provided enormous genomic choices for phylogenetic analysis in this globally important plant pathogen. We have compared a gene candidate recN, which codes for DNA repair and recombination function, with 16S rDNA/16-23S intergenic ribosomal gene sequences for identification and intraspecific phylogenetic interpretations in R. solanacearum. recN gene sequence analysis of R. solanacearum revealed subgroups within phylotypes (or newly proposed species within plant pathogenic genus, Ralstonia), indicating its usefulness for intraspecific genotyping. The taxonomic discriminatory power of recN gene sequence was found to be superior to ribosomal DNA sequences. In all, the recN-sequence-based phylogenetic tree generated with the Bayesian model depicted 21 haplotypes against 15 and 13 haplotypes obtained with 16S rDNA and 16-23S rDNA intergenic sequences, respectively. Besides this, we have observed high percentage of polymorphic sites (S 23.04%), high rate of mutations (Eta 276) and high codon bias index (CBI 0.60), which makes the recN an ideal gene candidate for intraspecific molecular typing of this important plant pathogen.

Greenhouse evaluation of Bacillus subtilis AP-01 and Trichoderma harzianum AP-001 in controlling tobacco diseases / Avaliação em estufa de dois agentes biológicos de controle de doenças do tabaco

Two biological control agents, Bacillus subtilis AP-01 (LarminarTM) and Trichoderma harzianum AP-001 (TrisanTM) alone or/in combination were investigated in controlling three tobacco diseases, including bacterial wilt (Ralstonia solanacearum), damping-off (Pythium aphanidermatum), and frogeye leaf spot (Cercospora nicotiana). Tests were performed in greenhouse by soil sterilization prior to inoculation of the pathogens. Bacterial-wilt and damping off pathogens were drenched first and followed with the biological control agents and for comparison purposes, two chemical fungicides. But for frogeye leaf spot, which is an airborne fungus, a spraying procedure for every treatment including a chemical fungicide was applied instead of drenching. Results showed that neither B. subtilis AP-01 nor T. harzianum AP-001 alone could control the bacterial wilt, but when combined, their controlling capabilities were as effective as a chemical treatment. These results were also similar for damping-off disease when used in combination. In addition, the combined B. subtilis AP-01 and T. harzianum AP-001 resulted in a good frogeye leaf spot control, which was not significantly different from the chemical treatment.

Dois agentes de controle biológico, Bacillus subtilis AP-01 (Larminar®) e Trichoderma harzianum AP-001 (Trisan®) foram avaliados separadamente ou em combinação quanto à capacidade de controlar três doenças do tabaco: murcha bacteriana (bacterial wilt, Ralstonia solanacearum), tombamento de mudas (damping-off, Pythium aphanidermatum), e mancha olho-de-rã (frogeye leaf spot, Cercospora nicotiana). Os testes foram realizados em estufa, esterilizando-se o solo antes da inoculação dos patógenos. Os patógenos causadores da murcha bacteriana e tombamento de mudas foram inicialmente encharcados e acompanhados com os agentes de controle biológico e, para comparação, com um fungicida químico. Para a mancha olho-de-rã, causada por um fungo anemófilo, utilizou-se um processo de spray ao invés do encharcamento. Os resultados indicaram que nenhum dos dois agentes de controle biológico, aplicado isoladamente, foi capaz de controlar a murcha bacteriana, mas quando em combinação a capacidade de controle foi similar ao do tratamento químico. Resultados semelhantes foram obtidos para o tombamento de mudas. Além disso, a combinação de Bacillus subtilis AP-01 e Trichoderma harzianum AP-001 resultou em um controle muito eficiente da mancha olho-de-rã, que não diferiu significativamente daquele obtido com o tratamento químico.

Progresso na seleção de progênies de tomate resistentes à murcha bacteriana através da avaliação epidemiológica da doença

Data from experiments carried out during the decade 83/92 by the Tomato Breeding Program of the were utilized to evaluate the efficience of the epidemiologic parameter Infection Rate to select resistant progenies to Pseudomonas solanacearum. Evidence were obtained that selected progenies from one to the sequence generation showed increased levels of resistance to the pathogen and yield capacity under infested soils cultivation, using standards of susceptible (Santa Cruz group) or resistente (Caraiba) varieties. The Infection Rate is able to detect high number of significant contrasts when compared to another parameter which do no consider the resistance as a resultant of a process which the expression change with the time.

Dados obtidos em experimentos realizados durante a década 83/92 pelo Programa de Melhoramento Genético do Tomateiro foram utilizados para avaliar a eficiência da utilização do parâmetro epidemiológico Taxa de Infecçâo para seleção de progênies resistentes ao patógeno Pseudomonas solanacearum. Foram obtidas evidências que as progênies selecionadas de uma geração para a seguinte apresentaram níveis crescentes de resistência e maior capacidade produtiva sob condição de cultivo em solos infestados pelo patógeno, usando-se como padrões de susceptibilidade variedades do grupo Santa Cruz e de resistência a variedade Caraiba. A Taxa de Infecção consegue detectar elevado número de contrastes significativos quando comparada com outros parâmetros que não consideram a resistência como resultante de um processo na qual a expressão é modificada com o tempo.

The Dynamic of Endophytic Bacteria at Different Growth Stage of Tomato and Biological Control of Tomato Bacterial Wilt / 微生物学通报

The dynamic of endophytic bacteria at different growth stage of tomato and use of these endophytic bacteria to control tomato bacterial wilt were studied. The results showed that endophytic bacteria could be found in the tomato seeds and their quantities reached the highest peak in the adult plants both in resistant and susceptible cultivars. The amount of endophytic bacteria in adult plants of resistant tomato cultivars was 2.43?10~5CFU/g FW in the root and 22.9?10~4 CFU/g FW in the stem, while the amount of endophytic bacteria in adult plants of susceptible tomato cultivars was 9.8?10~4CFU/g FW in the root and 13.4?10~4CFU/g FW in the stem respectively. Seventeen strains of endophytic bacteria from resistant cultivars and only seven strains from susceptible cultivars were found to be antagonistic to Ralstonia solanacearum. In addition, some strains of endophytic bacteria had the abilities of promoting tomato seed germination and controlling tomato bacterial wilt, among which, strain 5R and 3R had better control effect of 91.7% and 81.3% respectively.