Un cuarto de siglo de investigación genética en los trastornos neuropsiquiátricos en Costa Rica

El estudio de la base genética de los trastornos neuropsiquiátricos se inició en Costa Rica hace más de 25 años. En este tiempo se han realizado investigaciones enfocadas en diferentes trastornos: esquizofrenia, trastorno bipolar, demencia de Alzheimer, trastorno obsesivo compulsivo, trastorno obsesivo compulsivo, trastorno por déficit de atención y síndrome de Tourette. Los estudios realizados han tenido una amplia variación en lo que se refiere a diseño (ligamiento/asociación), muestra utilizada (familias/parejas de hermanos afectados/tríos), cobertura genómica (estudios con genes candidatos/tamizajes de todo el genoma) y definición del fenotipo (categoría diagnóstica/clasificación sindrómica/endofenotipo). Presentamos un resumen de los principales hallazgos genómicos obtenidos en estos estudios multidisciplinarios y discutimos la importancia, lecciones y retos de la investigación genética en trastornos psiquiátricos complejos.

In Costa Rica, the study of the genetic basis of neuropsychiatric disorders started more than 25 years ago. During this time, different research efforts have focused on several disorders: schizophrenia, bipolar disorder, Alzheimer's disease, obsessive-compulsive disorder, attention deficit/hyperactivity disorder, and Tourette syndrome. The studies have had a wide scope regarding design (linkage/association), sample used (families/sib pairs/trios), genome coverage (candidate gene studies/genome-wide scans), and phenotype definition (diagnostic category/syndromic classification/endophenotype). Here we present a summary of the main genomic findings of these multidisciplinary studies, and discuss the importance, lessons, and challenges of genetic research of complex psychiatric disorders.

Design of Personalized Medical Information System Based on Patient Gene Information / 医学信息学杂志

Based on describing the development overview of the personalized medicine,biological and information technologies,the paper proposes that it is feasible to construct a personalized medical information system based on patient gene information,introduces the business process,structural design,data acquisition and database design of the system,gives an outlook for the future development of the system.

Gene Mapping: Basics, Techniques and Significance.

Watson says, "Like the system of interstate highways spanning our country, the map of the human genome will be completed stretch by stretch". It may be possible to use genetic information to diagnose the disease accurately and to predict a patient's likely response to a particular medicine or treatment. For whole genome mapping development and application of mapping, sequencing and computational tools are very essential and also linkage, physical and sequence maps are required to put the information together. For most genome mapping projects involve markers consisting of a unique site in the genome and should be independent of any particular experimental resource. For mapping purpose the DNA and RNA identification is essential. These genes are identified by hybridizing DNA clones against Northern blot, cDNA libraries, Zoo blot, Western blot and Southern blot of genomic DNA digested with rare cutter restriction endonuclease. The various experimental studies of gene mapping have extended our understanding of the genetics. This has allowed the investigators to detect a particular gene, which is responsible for the disease. Recent studies have shown the various effective and scientific gene mapping techniques and gene identification methods, which are helpful to diagnose a particular disease. It is easy for the doctor to give right medicine to the right patient to cure the disease when he can identify the defective gene responsible for disease. This article reviews the details of identification techniques of genes, gene mapping with broad applications.

Production of a corneal opacity mouse by N-ethyl-N-nitrosourea mutagenesis and chromosome mapping of the mutant gene / 中华实验眼科杂志

Background N-ethyl-N-nitrosourea (ENU)-induced mouse mutagenesis is a powerful approach for the study of gene function and the generation of human disease models.Objective This study was to create the corneal morphologic change and map the mutant gene of a kind of corneal opacity in ENU mutagenesis in mouse.Methods ENU was intraperitoneally injected in forty C57BL/ 6J (B6) male mice aged 8-10 weeks old.The male mice were mated with the same strain female mice.Their progenies were screened for visible eye mutation,and the mutant mice were mated with the same strain mice to confirm the heredity of mutation phenotypes.Hematoxylin & eosin staining was used to examine the histopathological change of cornea in one mouse with ENU-induced corneal opacity.To map the mutant gene,[(B6×D2)F1 ×B6] N2 mutant mice were bred,and the genome of the N2 mice was scanned by microsatellite markers distributed equally on the mouse chromosome.The microsatellite linked to the mutant gene was determined by the log odds score.This experimental procedure was approved by Ethic Committee about Experimental Animal Care and Use of Yangzhou University.Results The founder mouse,which was the progeny of an ENU-treated B6 male mouse and an untreated B6 female mouse,had a corneal opacity phenotype.After mating the mutant with B6 mice,19 of 59 descendants appeared corneal opacity phenotype.Thickening of corneal stroma,neoangiogenesis,infiltration of inflammatory cells and proliferation of fibroblasts were exhibited in cloudy cornea in ENU-induced mutated mice under the optical microscope.After linkage analysis between microsatellite markers and the mutant gene,the mutant gene was linked to D2Mi307,which was located at 63.42 cM.Three cases of 26 N2 mice underwent recombination with the LOD 3.79.The mutant gene associated with the cornea phenotype was located on chromosome 2.Conclusions This study map the mutant gene associated with the cornea phenotype on chromosome 2.The strain might be used as a mouse model for heritable human corneal opacity.

Clinical and genetic aspects of generalized aggressive periodontitis in families of Tumkur district of Karnataka, India.

Background: Aggressive periodontitis (AP) is a complex disease whose phenotype is determined by genetic and environmental influences on the affected individuals. About 45% of the adult population in India has periodontitis. In Tumkur district of Karnataka, India, consanguineous first cousin and uncle-niece marriages are common, with a high incidence of AP. These discrepancies in the expression of periodontal disease directed us to find genetic etiology with respect to the Tumkur population. The clinical and genetic aspects of AP from this area have been presented in this paper. Materials and Methods: A total of nine families were ascertained at the Department of Periodontics, Sri Siddhartha Dental College and Hospital (Sri Siddhartha University), Tumkur. The clinical and radiographic data were gathered according to 1999 Consensus Classification of Periodontal Diseases. Peripheral blood samples were collected for total genomic DNA isolation using a Wizard TM Genomic Purification Kit (Promega, USA). The homozygosity mapping was carried out in a large consanguineous family to map a novel locus using autosomal markers from the CHLC/Weber Human Screening Set 10 (Research Genetics Inc., USA) at Indian Institute of Sciences, Bangalore. Results: The pedigree analysis suggested that the disorder is segregating as an autosomal trait. The homozygosity mapping failed to identify a locus for generalized AP in the family. Conclusion: The disorder may not be segregating as an autosomal recessive trait and we could have been misled by consanguinity in the family. It could be a multifactorial trait, or it could be still segregating as an autosomal recessive trait, but the region of homozygosity could be small and we failed to detect it using microsatellite markers. Therefore, SNP-marker-based analysis is warranted in future.

Loci de caracteres quantitativos (qtl) em peixes / Quantitative trait loci (qtl) in fishes / Loci de caracteres cuantitativos (qtl) en peces

Entre as aplicações do mapeamento genômico está a procura por loci de caracteres quantitativos, influenciando características economicamente importantes na produção animal. A metodologia identifica relações entre variações no nível do DNA e valores fenotípicos. Esses dados fenotípicos podem ser referentes à características de herança simples ou quantitativa (herança poligênica). Em anos recentes, análises têm sido focadas, principalmente em caracteres quantitativos, pois são a base das características de produção. No entanto, a natureza poligênica desses caracteres com variação contínua dificulta análises clássicas, por meio de cruzamento para isolamento gênico, principalmente em razão da falta de segregação fenotípica discreta. Nesses casos, regiões do DNA responsáveis pelo fenótipo são definidas como QTL (Quantitative Trait Loci). Sua identificação pode ser realizada por varredura genômica ou análise de cromossomos individualmente. Um próximo passo é identificar os genes presentes nas regiões próximas a marcadores ligados ao QTL. O procedimento é realizado por meio de mapeamento fino, com o emprego de um maior número de marcadores próximos a região de localização do QTL. Este refinamento da análise de ligação, ou saturação da região de mapeamento, permite reduzir o tamanho da região mapeada, e, portanto, reduzir o número de possíveis genes relacionados ao QTL...

Among the applications of genome mapping is the search for loci that influence economically important quantitative traits in animal production. The methodology identifies the relationship among variations at DNA level and phenotypic values. These phenotypic data may be referent to traits of simple or quantitative (polygenic) inheritance. In recent years, analyses have been mainly focused in quantitative traits, since these are usually production traits. However, the polygenic nature of these particular characters with continuous variation makes it difficult to employ classical analyses of crosses for gene isolation, mainly due to the lack of discrete phenotypic segregation. In these cases, DNA regions responsible for the phenotype are defined as QTL (Quantitative Trait Loci). Its identification can be done by a whole-genome screening or analyzing chromosomes individually. A next step is to identify the genes present in the regions next to markers linked to QTL. The procedure is done by fine mapping, using a larger number of markers next to the region of the QTL position. This refinement of the linkage analysis or saturation of the mapping region allows reducing the size of the mapped region and thus reduce the number of possible genes related to the QTL...

Entre las aplicaciones del mapeo genómico está la búsqueda por loci de caracteres cuantitativos, influenciando características económicamente relevantes en la producción animal. La metodología identifica relaciones entre variaciones a nivel del ADN y valores fenotípicos. Esos datos fenotípicos pueden ser referentes a las características de herencia simple o cuantitativa (herencia poligénica). En años recientes, análisis han sido enfocadas, principalmente en caracteres cuantitativos, pues son la base de las características de producción. Sin embargo, la naturaleza poligénica de esos caracteres con variación continua dificulta análisis clásicos, que utiliza cruzamientos para aislamiento génico, principalmente en razón de la falta de segregación fenotípica discreta. En esos casos, regiones del ADN responsables por el fenotipo son definidas como QTL (Quantitative Trait Loci). Su identificación puede ser realizada por barredura genómica o por análisis individual de cromosomas. Un próximo paso es identificar los genes presentes en las regiones próximas a los marcadores unidos al QTL...

Three novel polymorphic microsatellite markers for the glaucoma locus GLC1B by datamining tetranucleotide repeats on chromosome 2p12-q12

In order to identify new markers around the glaucoma locus GLC1B as a tool to refine its critical region at 2p11.2-2q11.2, we searched the critical region sequence obtained from the UCSC database for tetranucleotide (GATA)n and (GTCT)n repeats of at least 10 units in length. Three out of four potential microsatellite loci were found to be polymorphic, heterozygosity ranging from 64.56 percent to 79.59 percent. The identified markers are useful not only for GLC1B locus but also for the study of other disease loci at 2p11.2-2q11.2, a region with scarcity of microsatellite markers.

Progress on susceptible gene mapping of type 2 diabetes / 中华内分泌代谢杂志

Type 2 diabetes is a polygenic and complex disease.Various approaches, including association analysis, positional cloning, positional candidate gene approach and genome-wide association analysis, were used to identify its susceptible genes.This article summarized the recent findings on susceptible gene mapping of type 2 diabetes.

Homology of polytene elements between Drosophila and Zaprionus determined by in situ hybridization in Zaprionus indianus

The drosophilid Zaprionus indianus due to its economical importance as an insect pest in Brazil deserves more investigation into its genetics. Its mitotic karyotype and a line-drawing map of its polytene chromosomes are already available. This paper presents a photomap of Z. indianus polytene chromosomes, which was used as the reference map for identification of sections marked by in situ hybridization with gene probes. Hybridization signals for Hsp70 and Hsr-omega were detected, respectively, in sections 34B and 32C of chromosome V of Z. indianus, which indicates its homology to the chromosomal arm 3R of Drosophila melanogaster and, therefore, to Muller's element E. The main signal for Hsp83 gene probe hybridization was in section 17C of Z. indianus chromosome III, suggesting its homology to arm 3L of D. melanogaster and to element D of Muller. The Ubi probe hybridized in sections 10C of chromosome II and 17A of chromosome III. Probably the 17A is the polyubiquitin locus, with homology to arm 3L of D. melanogaster and to the mullerian D element, as suggested also by Hsp83 gene location. The Br-C gene was mapped in section 1D, near the tip of the X chromosome, indicating its homology to the X chromosome of D. melanogaster and to mullerian element A. The Dpp gene probe hybridized mainly in the section 32A of chromosome V and, at lower frequencies to other sections, although no signal was observed as expected in the correspondent mullerian B element. This result led to the suggestion of a rearrangement including the Dpp locus in Z. indianus, the secondary signals possibly pointing to related genes of the TGF-beta family. In conclusion, the results indicate that chromosomes X, III, V of Z. indianus are respectively correspondents to elements A, D, and E of Muller. At least chromosome V of Z. indianus seems to share synteny with the 3R arm of D. melanogaster, as indicated by the relative positions of Hsp70 and Hsr-omega, although the Dpp gene indicates a disruption of synteny in its distal region.

Isolation, characterization and mapping of temperature-sensitive mutants of mycobacteriophage I3.

Eighteen temperature-sensitive mutants of mycobacteriophage I3 have been isolated and partially characterized. All the mutants were defective in vegetative replication. Based on temperature shift experiments with the temperature sensitive mutants, the thermosensitive phase of the phage development period has been characterized for each mutant. The genes have been mapped by recombination analysis. The early, continuous and middle genes seem to cluster on the genetic map.