Variation and genetic structure of the endangered Lepus flavigularis (Lagomorpha: Leporidae) / Variación y estructura genética de la liebre en peligro de extinción, Lepus flavigularis (Lagomorpha: Leporidae)

Abstract Lepus flavigularis, is an endemic and endangered species, with only four populations inhabiting Oaxaca, México: Montecillo Santa Cruz, Aguachil, San Francisco del Mar Viejo and Santa María del Mar. Nevertheless, human activities like poaching and land use changes, and the low genetic diversity detected with mitochondrial DNA and allozymes in previous studies, have supported the urgent need of management strategies for this species, and suggest the definition of management units. For this, it is necessary to study the genetic structure with nuclear genes, due to their inheritance and high polymorphism, therefore, the objective of this study was to examine the variation and genetic structure of L. flavigularis using nuclear microsatellites. We sampled four populations of L. flavigularis and a total of 67 jackrabbits were captured by night sampling during the period of 2001 to 2006. We obtained the genomic DNA by the phenol-chloroform-isoamyl alcohol method. To obtain the diversity and genetic structure, seven microsatellites were amplified using the Polymerase Chain Reaction (PCR); the amplifications were visualized through electrophoresis with 10 % polyacrylamide gels, dyed with ethidium bromide. Genetic diversity was determined using the software GenAlEx v. 6.4, and genetic structure was obtained with ARLEQUIN v. 3.1; null alleles were evaluated using the program Micro-Checker v.2.2.2. Additionally, a Bayesian analysis was performed with software STRUCTURE v. 2.2.3., and the isolation by distance (IBD) was studied using the program PASSAGE v.2.0.11.6. Our results showed that the genetic variation found was low ( HO = 0.30, HE = 0.24) when compared to other jackrabbit species. Fixed alleles and moderate levels of genetic differentiation (F ST = 0.18, P = 0.001) were detected among populations, indicating the effect of the genetic drift and limited gene flow. Bayesian clustering analysis revealed two groups: (1) jackrabbits from Montecillo Santa Cruz, and (2) individuals living in Aguachil, San Francisco del Mar Viejo and Santa María del Mar. No evidence was found of isolation by distance. It is possible that the geographic barriers present between populations (e.g. lagoons, human settlements), rather than the geographical distance between them, may explain the observed genetic structure. The inbreeding coefficient was negative ( FIS =-0.27, P = 0.03), indicating genetic sub-structure in populations. We suggest two management units based on the genetically closer populations, which will help define precise conservation actions in L. flavigularis. This research is the basis for defining translocation of individuals between populations, nevertheless, a more extensive future study, with specific molecular markers for L. flavigularis, is required. In addition, it is necessary to analyze the barriers that limit the gene flow, since it is urgent to reduce the genetic differentiation between populations and increase the genetic diversity of this species.

Resumen Lepus flavigularis es una especie endémica y en peligro, con solo cuatro poblaciones ubicadas en Oaxaca, México: Montecillo Santa Cruz, Aguachil, San Francisco del Mar Viejo y Santa María del Mar. Las actividades humanas (e.g. cacería, cambios de uso de suelo) y la baja diversidad genética detectada con ADN mitocondrial y aloenzimas muestran la urgencia de desarrollar estrategias de manejo para esta especie. Para definir unidades de manejo es necesario estudiar la estructura genética con genes nucleares debido a su herencia y alto polimorfismo, por lo tanto, el objetivo de este estudio fue examinar la variación y estructura genética de L. flavigularis con microsatélites nucleares. Se obtuvo el ADN genómico de 67 liebres de las cuatro poblaciones de L. flavigularis, capturadas mediante muestreo nocturno de 2001 a 2006, mediante el método fenol-cloroformo-alcohol isoamílico. Para obtener la diversidad y estructura genética se amplificaron siete microsatélites con la Reacción en Cadena de la Polimerasa (PCR). Las amplificaciones se visualizaron mediante electroforesis con geles de poliacrilamida al 10 %, teñidas con bromuro de etidio. La diversidad genética se determinó con el programa GenAlEx v.6.4, y la estructura genética se obtuvo con el ARLEQUIN v.3.1. Se evaluaron los alelos nulos con el programa Micro-Checker v.2.2.2. Adicionalmente, se realizó un análisis bayesiano con el software STRUCTURE v.2.2.3, y se estudió el aislamiento por distancia (IBD) mediante el programa PASSAGE v.2.0.11.6. La variación genética encontrada fue baja ( HO = 0.30, HE = 0.24) en comparación con otras especies de liebres. Se detectaron alelos fijos y diferenciación genética moderada (F ST = 0.18, P < 0.001) entre las poblaciones, lo que indica el efecto de la deriva genética y flujo genético limitado. El análisis Bayesiano reveló dos grupos: (1) liebres de Montecillo Santa Cruz, e (2) individuos de Aguachil, San Francisco del Mar Viejo y Santa María del Mar. No se detectó evidencia de aislamiento por distancia. Es posible que las barreras geográficas presentes entre las poblaciones (e.g. lagunas, asentamientos humanos), más que la distancia geográfica entre ellas, expliquen la estructura genética observada. El coeficiente de endogamia fue negativo ( FIS =-0.27, P = 0.03), indicando sub-estructura genética en las poblaciones. Sugerimos dos unidades de manejo con base en las poblaciones más cercanas genéticamente, lo que ayudará a definir acciones precisas de conservación en L. flavigularis. Esta investigación es la base para definir la translocación de individuos entre las poblaciones, sin embargo, se requiere un estudio futuro más amplio que incorpore marcadores moleculares específicos para L. flavigularis. Asimismo, es necesario analizar las barreras que limitan el flujo genético, ya que es urgente reducir la diferenciación genética entre poblaciones e incrementar la diversidad genética de esta especie.

Las unidades de planificación y gestión territorial como directriz para la zonificación urbana / Planning units and land management as guidelines for urban zoning

El presente artículo, derivado de investigación, presenta el marco conceptual y metodológico resultados del estudio de las Unidades de Planificación Territorialy de Gestión como Instrumento Operativo para la toma de Decisiones Urbano Rural, los POTs y PDM, instrumentos de planteamiento en el corto, mediano y largo plazo, en este orden la zonificación del territorio se convierte en la alternativa para plantear y fortalecer las Unidades de Gestión y Planificación Territorial donde se debe fortalecer la institucionalidad a partir de la incorporación de los actores y sectores público, privado y sociedad civil.

This current article, derived from a piece of research, introduces in the theoretical and methodological frameworks, the results of a study of the Land Planning Units and of Management as an Operational Instrument for the Rural-Urban decisionmaking, the Territorial Ordering Plan –TOP– and Municipal Development Plan –MDP–, instruments of approach in the short, medium and long terms; in this order, the zoning of the territory becomes an alternative to raise and to strengthen the Management Units and the Territorial Planning, where the institutional framework must be consolidated from the incorporation of public, private actors and sectors, and the civil society.

Identifying management units in non-endangered species: the example of the sloth Bradypus variegatus Schinz, 1825

In this study we propose the analysis of genetic diversity of the common three-toed sloth, Bradypus variegatus, in an attempt to understand population structure, identify divergent intraspecific units, and contribute to the knowledge of biodiversity in the neotropical forests. We analyzed a 387 bp segment of the mitochondrial DNA control region in 28 individuals distributed in different localities of both Atlantic and Amazon forests. Our results demonstrated that the genetic diversity of B. variegatus is distributed in six management units, MUs. The observed MUs encompass six phylogenetic lineages and represent respectively north and south regions of Atlantic forest, three regions within the Amazon forest, and a transition region between these two biomes. Considering the fact that these MUs are concordant with phylogroups and endemism areas already described for other vertebrate species, we can say that the study of B. variegatus, a widely distributed and not endangered species, can help to identify areas for conservation biology purposes in neotropical rain forests.

Neste estudo nós realizamos a análise da diversidade genética da preguiça comum, Bradypus variegatus, a fim de compreender os padrões de estrutura populacional, identificar unidades intraespecíficas divergentes e contribuir para o conhecimento da biodiversidade nas florestas da região neotropical. Nós analisamos um segmento de 387 pb da região controle do DNA mitocondrial de 28 indivíduos distribuídos em diferentes localidades da Floresta Amazônica e da Mata Atlântica. Os resultados obtidos demonstram que a diversidade genética da espécie pode ser representada em seis diferentes unidades de manejo (UM). Tais UMs englobam seis linhagens filogenéticas e estão localizadas em diferentes regiões geográficas sendo elas, as porções norte e sul da Mata Atlântica, três regiões dentro da área de Floresta Amazônica e uma área de transição entre os dois domínios de mata. As diferentes unidades intraespecíficas de B. variegatus são concordantes com grupos filogeográficos e áreas de endemismo já observadas para outras espécies de vertebrados. Levando em consideração o fato de que estas UMs concordam com filogrupos e áreas de endemismo previamente descritos para outras espécies de vertebrados, o estudo da preguiça comum, uma espécie amplamente distribuída e considerada não ameaçada de extinção, pode auxiliar na identificação de áreas destinadas à conservação biológica ao longo das florestas úmidas da região neotropical.

Identifying management units in non-endangered species: the example of the sloth Bradypus variegatus Schinz, 1825

In this study we propose the analysis of genetic diversity of the common three-toed sloth, Bradypus variegatus, in an attempt to understand population structure, identify divergent intraspecific units, and contribute to the knowledge of biodiversity in the neotropical forests. We analyzed a 387 bp segment of the mitochondrial DNA control region in 28 individuals distributed in different localities of both Atlantic and Amazon forests. Our results demonstrated that the genetic diversity of B. variegatus is distributed in six management units, MUs. The observed MUs encompass six phylogenetic lineages and represent respectively north and south regions of Atlantic forest, three regions within the Amazon forest, and a transition region between these two biomes. Considering the fact that these MUs are concordant with phylogroups and endemism areas already described for other vertebrate species, we can say that the study of B. variegatus, a widely distributed and not endangered species, can help to identify areas for conservation biology purposes in neotropical rain forests.

Neste estudo nós realizamos a análise da diversidade genética da preguiça comum, Bradypus variegatus, a fim de compreender os padrões de estrutura populacional, identificar unidades intraespecíficas divergentes e contribuir para o conhecimento da biodiversidade nas florestas da região neotropical. Nós analisamos um segmento de 387 pb da região controle do DNA mitocondrial de 28 indivíduos distribuídos em diferentes localidades da Floresta Amazônica e da Mata Atlântica. Os resultados obtidos demonstram que a diversidade genética da espécie pode ser representada em seis diferentes unidades de manejo (UM). Tais UMs englobam seis linhagens filogenéticas e estão localizadas em diferentes regiões geográficas sendo elas, as porções norte e sul da Mata Atlântica, três regiões dentro da área de Floresta Amazônica e uma área de transição entre os dois domínios de mata. As diferentes unidades intraespecíficas de B. variegatus são concordantes com grupos filogeográficos e áreas de endemismo já observadas para outras espécies de vertebrados. Levando em consideração o fato de que estas UMs concordam com filogrupos e áreas de endemismo previamente descritos para outras espécies de vertebrados, o estudo da preguiça comum, uma espécie amplamente distribuída e considerada não ameaçada de extinção, pode auxiliar na identificação de áreas destinadas à conservação biológica ao longo das florestas úmidas da região neotropical.

The Operating Status of Medical Education Management Units in Korea / 한국의학교육

PURPOSE: The purpose of this study was to estimate the operating status of existing medical education management units in medical colleges and to define the roles of these units to provide basic information to medical schools contemplating to establish similar management units. METHODS: A structured questionnaire survey was conducted via mail. The survey 41 medical colleges across the nation and was done during September 2003 and March 2005. The assessment instrument included six items assessing the organizational structure, composition, major activities, self-satisfaction with performance, administration and financial aspects and the need for further development in the medical education unit for medical colleges with a medical education management unit. There were only two items assessing demand for establishment of a medical education management unit, prerequisite conditions for establishment, the expected role of such a system for medical colleges without a medical education management unit. RESULTS: Of 41 medical colleges, 18 had a medical education management unit as of September 2003 and 32 as of March 2005. The major activities of these 18 management units included curriculum development(26.7%), faculty development(26.7%), support for PBL(16.0%) and OSCE(12.0%). Recently, these units have become involved in enhancing clinical clerkship as well as improving teaching skills. To have a medical education-related unit run smoothly, at least two tenured faculty members majoring in education and medical education were needed. And a compensation systems was required for those professors working in the unit as a second post but without pay. CONCLUSION: This study underscored the importance of professional faculty members, and administrative and financial supports in having a medical education management unit meet its objectives. The role of the dean of medical college seems crucial in deciding how the unit is operated.