Brain tissue segmentation method based on maximum between-cluster variance optimized by the difference search algorithm / 国际生物医学工程杂志

Objective@#To study a maximum between-cluster variance based on differential search algorithm, and to select the multi-threshold for effectively segmentation of brain magnetic resonance images.@*Methods@#The brain extraction tool(BET) algorithm was used to remove the non-brain tissue part of the original magnetic resonance image. The best-fit with coalescing(BFC) algorithm was used to remove the intensity non-uniformity. The differential search algorithm was used to optimize the maximum between-cluster variance of the image to find the optimal threshold for multi-threshold segmentation of the magnetic resonance image. The method was validated using simulated magnetic resonance(MR) brain image data provided by BrainWeb.@*Results@#For MR images with different noise levels and intensity inhomogeneities, the proposed method was better than FSL, SPM and Brainsuite methods.@*Conclusions@#The maximum between-cluster variance based on differential search algorithm has better segmentation accuracy and robustness, especially for cerebrospinal fluid.

Brain tissue segmentation method based on maximum between-cluster variance optimized by the difference search algorithm / 国际生物医学工程杂志

Objective To study a maximum between-cluster variance based on differential search algorithm, and to select the multi-threshold for effectively segmentation of brain magnetic resonance images. Methods The brain extraction tool(BET) algorithm was used to remove the non-brain tissue part of the original magnetic resonance image. The best-fit with coalescing(BFC) algorithm was used to remove the intensity non-uniformity. The differential search algorithm was used to optimize the maximum between-cluster variance of the image to find the optimal threshold for multi-threshold segmentation of the magnetic resonance image. The method was validated using simulated magnetic resonance (MR) brain image data provided by BrainWeb. Results For MR images with different noise levels and intensity inhomogeneities, the proposed method was better than FSL, SPM and Brainsuite methods. Conclusions The maximum between-cluster variance based on differential search algorithm has better segmentation accuracy and robustness, especially for cerebrospinal fluid.

A novel pectoral muscle segmentation from scanned mammograms using EMO algorithm

Mammogram images are majorly used for detecting the breast cancer. The level of positivity of breast cancer is detected after excluding the pectoral muscle from mammogram images. Hence, it is very significant to identify and segment the pectoral muscle from the mammographic images. In this work, a new multilevel thresholding, on the basis of electro-magnetism optimization (EMO) technique, is proposed. The EMO works on the principle of attractive and repulsive forces among the charges to develop the members of a population. Here, both Kapur's and Otsu based cost functions are employed with EMO separately. These standard functions are executed over the EMO operator till the best solution is achieved. Thus, optimal threshold levels can be identified for the considered mammographic image. The proposed methodology is applied on all the three twenty-two mammogram images available in mammographic image analysis society dataset, and successful segmentation of the pectoral muscle is achieved for majority of the mammogram images. Hence, the proposed algorithm is found to be robust for variations in the pectoral muscle.

Correction of the projection center of rotation based on the sinogram using translation matching method / 生物医学工程学杂志

The accurate position of the center of rotation (COR) is a key factor to ensure the quality of computed tomography (CT) reconstructed images. The classic cross-correlation matching algorithm can not satisfy the requirements of high-quality CT imaging when the projection angle is 0 and 180°, and thus needs to be improved and innovated. In this study, considering the symmetric characteristic of the 0° and flipped 180° projection data in sinogram, a novel COR correction algorithm based on the translation and match of the 0° and 180° projection data was proposed. The OTSU method was applied to reduce noise on the background, and the minimum offset of COR was quantified using the -norm, and then a precise COR was obtained for the image correction and reconstruction. The Sheep-Logan simulation model with random gradients and Gaussian noise and the real male SD rats samples which contained the heterogenous tooth image and the homogenous liver image, were adopted to verify the performance of the new algorithm and the cross-correlation matching algorithm. The results show that the proposed algorithm has better robustness and higher accuracy of the correction (when the sampled data is from 10% to 50% of the full projection data, the COR value can still be measured accurately using the proposed algorithm) with less computational burden compared with the cross-correlation matching algorithm, and it is able to significantly improve the quality of the reconstructed images.

Segmenting mammographic microcalcifications using a semi-automatic procedure based on Otsu's method and morphological filters

INTRODUCTION: Breast cancer has the second highest world's incidence rate, according to the Brazilian National Cancer Institute (INCa). Clinical examination and mammography are the best methods for early diagnosis. Computer-aided detection (CADe) and computer-aided diagnosis (CADx) systems are developed to improve mammographic diagnosis. Basically, CADx systems have three components: (i) segmentation, (ii) parameters extraction and selection, (iii) lesion classification. The first step for a CADx system is segmentation. METHODS: A microcalcification segmentation method is proposed, based on morphological operators, Otsu's Method and radiologists' knowledge. Pre-processing with top-hat operators improves contrast and reduces background noise. The Otsu's method automatically selects the best grey-level threshold to segment microcalcifications, obtaining binary images. Following, inferior reconstruction and morphological dilatation operators are applied to reconstruct lost structure details and fill small flaws in the segmented microcalcifications. Finally, the Canny edge detection is applied to identify microcalcifications contour candidates for each region-of-interest (ROI). Two experienced radiologists intervene in this semi-automatic method, firstly, selecting the ROI and, then, analyzing the segmentation result. The method was assessed in 1000 ROIs from 158 digital images (300 dpi, 8 bits). RESULTS: Considering the radiologists opinion, the rates of ROIs adequately segmented to establish a diagnosis hypothesis were 97.8% for one radiologist and 97.3% for the other. Using the Area Overlap Measure (AOM) and the 2136 microcalcifications delineated by an experienced radiologist as gold standards, the method achieved an average AOM of 0.64±0.14, being 0.56±0.09 for small microcalcifications and 0.66±0.13 for the large ones. Moreover, AOM was 0.64±0.13 for the benign and 0.64±0.14 for the malignant lesions with no statistical differences between them. CONCLUSION: Based on these findings, the proposed method could be used to develop a CADx system that could help early breast cancer detection.

An approach to automatically segment the media-adventitia borders in IVUS / Uma associação de técnicas para segmentação automática da fronteira da média-adventícia em IVUS

Por ser capaz de mostrar aspectos morfológicos e patológicos de ateroscleroses, o Ultrassom Intravascular (IVUS) se tornou uma das modalidades de imagens médicas mais confiáveis e empregadas em intervenções cardíacas. As características de sua imagem aumentam as chances de um bom diagnóstico, resultando em terapias mais precisas. O estudo de segmentação da fronteira média-adventícia, dentre muitas aplicações, é importante para o aprendizado das propriedades mecânicas e determinação de algumas medidas específicas (raio, diâmetro, etc.) em vasos e placas. Neste trabalho, uma associação de técnicas de processamento de imagens está sendo proposta para atingir alta acurácia na segmentação da borda média-adventícia. Para tanto, foi feita uma combinação das seguintes técnicas: Redução do Speckle por Difusão Anisotrópica (SRAD), Wavelet, Otsu e Morfologia Matemática. Primeiramente, é usado SRAD para atenuar os ruídos speckle. Posteriormente, é executada Transformada Wavelet para extração das características dos vasos e placas. Uma versão binarizada dessas características é criada na qual o limiar ótimo é definido por Otsu. Finalmente, é usada Morfologia Matemática para obtenção do formato da adventícia. O método proposto é avaliado ao segmentar 100 imagens de alta complexidade, obtendo uma média de Verdadeiro Positivo (TP(%)) = 92,83 ± 4,91, Falso Positivo (FP(%)) = 3,43 ± 3,47, Falso Negativo (FN(%)) = 7,17 ± 4,91, Máximo Falso Positivo (MaxFP(mm)) = 0,27 ± 0,22, Máximo Falso Negativo (MaxFN(mm)) = 0,31 ± 0,2. A eficácia do nosso método é demonstrada, comparando este resultado com outro trabalho recente na literatura.

By being able to show morphological and pathological aspects of atherosclerosis, the Intravascular Ultrasound (IVUS) be¬came one of the most reliable and employed medical imaging modality in cardiac interventions. Its image characteristics in¬crease the chances of a good diagnostic, resulting in a precise therapy. The study of media-adventitia borders segmentation in IVUS, among many applications, is important for learning about the mechanical properties and determining some specific measurements (radius, diameter, etc.) in vases and plaques. An approach is proposed to achieve high accuracy in media-adventitia borders segmentation, by making a combination of different image processing operations: Speckle Reducing Anisotropic Diffusion (SRAD), Wavelet, Otsu and Mathematical Morphology. Firstly, SRAD is applied to attenuate the speckle noise. Next, the vessel and plaque features are extracted by performing Wavelet Transform. Optimal thresholding is car¬ried out by Otsu method to create a binarized version of these features. Then, Mathematical Morphology operations are used to obtain an adventitia shape. The proposed approach is evaluated by segmenting 100 challenging images, obtaining an average of True Positive (TP(%)) = 92.83 ± 4.91, False Positive (FP(%)) = 3.43 ± 3.47, False Negative (FN(%)) = 7.17 ± 4.91, Max False Positive (MaxFP(mm)) = 0.27 ± 0.22, Max False Negative (MaxFN(mm)) = 0.31 ± 0.2. The effectiveness of our approach is demonstrated by comparing this result with another recent work in the literature.

Extraction of Liver Focal Lesions in Abdominal CT Image Based on Local OTSU and Zone Market Screening / 医疗卫生装备

Objective To prepare for extraction of liver focal lesion in view of its characteristics of images. Methods A region of interest in the liver region comprising the focal lesion to create a local image was selected firstly, then the threshold to pre-segment the local image was got automatically by using local OTSU in clusters algorithm, at last mark sifting methods to get red of inner holes and outer dissociate areas to get the final contour was used. Results The algorithm can efficiently extract the focal liver lesion. Conclusion The way of extraction of liver focal lesions with local OTSU and zone market screening is rapid and effective.

OTSU-based self-adaptation threshold partition algorithm for optic-microscopic image / 医疗卫生装备

It's very difficult segment the medical microscopic image for its features such as multi-objective, complicated background, abundant disturbances and noises, little contrast. After comparing the results of several segmentation arithmetics, this paper puts forward an OTSU-based self-adaptation threshold partition algorithm for effective segmentation of medical microscopic image.