ABSTRACT
BACKGROUND: Procambarus clarkii produces high-quality, delicious meat that is high in protein, low in fat, and rich in calcium and phosphorus. It has become an important aquatic resource in China. Our objectives are (i) to analyze the level of genetic diversity of P. clarkii populations; (ii) to explore the genetic differentiation (Gst); and (iii) to propose appropriate strategies for the conservation. RESULTS: In this study, Shannon's index (I) and Nei's gene diversity index (H) for P. clarkii were high (I = 0.3462 and H = 0.2325 on average and I = 0.6264, H = 0.4377 at the species level) based on the SSR markers. The expected heterozygosity value of 17 microsatellite loci in 25 crayfish populations was 0.9317, the observed heterozygosity value was 0.9121, and the observed number of alleles per locus was 2.000; and the effective number of alleles per locus was 1.8075. Among the P. clarkii populations, the inbreeding coefficient within populations (Fis) was 0.2315, overall inbreeding coefficient (Fit) was 0.4438, genetic differentiation coefficient among populations (Fst) was 0.3145 and gene differentiation (Gst) was 0.4785 based on SSR analyses. The cluster analysis results obtained by unweighted pair-group method with arithmetic mean (UPGMA) analysis, principal coordinate analysis (PCoA) and STRUCTURE analysis were similar. A mantel test showed that the isolation-by-distance pattern was not significant. CONCLUSIONS: The high Gst among P. clarkii populations is attributed to genetic drift and geographic isolation. The results indicated that more P. clarkii populations should be collected when formulating conservation and aquaculture strategies.
Subject(s)
Animals , Genetic Variation , Microsatellite Repeats , Astacoidea/genetics , Phylogeny , China , Polymerase Chain Reaction , Aquaculture , Aquatic Environment , Wetlands , Genetic Carrier ScreeningABSTRACT
Abstract Background: Paragonimus spp. are trematode parasites that infect human populations worldwide. It is believed that infection rates within Asia reach five to ten percent of the total population. Three of the largest areas of possible infection are Asia, Central and South America as well as Africa, where the total population at risk is estimated to be 293 million people. Humans are infected via ingestion of raw or undercooked decapod crustaceans. Objective: To identify the presence of Paragonimus spp. in crabs from Bogotá, Colombia. Methods: The native crab Neostrengeria macropa and the aquatic invasive crayfish Procambarus clarkii in Bogotá, Colombia, were collected from local markets, pet stores and waterways and dissected to assess the presence of Paragonimus spp. Results: The native crab species, N. macropa (n=29) had an infection prevalence of 17.2%, while the invasive crayfish species, P. clarkii (n=22), had a prevalence of 36.4% combined from both field captured animals and purchased samples. Conclusion: Although the estimated prevalence is lower compared to previous studies in other cities of Colombia, Paragonimus represent a risk to human health. Several environmental factors may contribute to the difference in prevalence including collecting season, rainfall, temperature, altitude and the El Niño Southern Oscillation.
Resumen Antecedentes: Los Paragonimus spp. constituyen un grupo de parásitos tremátodos que infectan a humanos en todo el mundo. Se considera que entre 5 y 10% de la población humana de Asia está infectada. Las áreas con mayor posibilidad de infección son Asia, Centro y Sur América, así como África. Se estima que 293 millones de personas están en riesgo de infección. Los humanos se pueden infectar al consumir crustáceos decápodos crudos. Objetivo: Identificar la presencia de Paragonimus spp. en crustáceos en Bogotá, Colombia. Métodos: Una muestra de cangrejos nativos Neostrengeria macropa y de decápodos invasores Procambarus clarkii fue colectada tanto en mercados locales de Bogotá, como en tiendas de mascotas, ríos, y quebradas. Posteriromente fueron diseccionados para detectar la presencia de Paragonimus spp. Resultados: La prevalencia de la infección en N. macropa (n=29) fue de 17,2%, y en la especie invasora, P. clarkii (n=22), fue de 36,4% (porcentaje combinado de los animales colectados en el campo y los comprados en tiendas). Conclusión: Aunque la prevalencia en este estudio fue más baja que la de otras investigaciones relacionadas, se considera que existe riesgo para la salud humana. Es probable que algunos factores medio ambientales hayan contribuido a la diferencia, incluyendo: temporada de colecta, nivel de lluvias, temperatura, altura, y el fenómeno El Niño.
ABSTRACT
Abstract Red swamp crayfish is an important model organism for research of the invertebrate innate immunity mechanism. Its excellent disease resistance against bacteria, fungi, and viruses is well-known. However, the antiviral mechanisms of crayfish remain unclear. In this study, we obtained high-quality sequence reads from normal and white spot syndrome virus (WSSV)-challenged crayfish gills. For group normal (GN), 39,390,280 high-quality clean reads were randomly assembled to produce 172,591 contigs; whereas, 34,011,488 high-quality clean reads were randomly assembled to produce 182,176 contigs for group WSSV-challenged (GW). After GO annotations analysis, a total of 35,539 (90.01%), 14,931 (37.82%), 28,221 (71.48%), 25,290 (64.05%), 15,595 (39.50%), and 13,848 (35.07%) unigenes had significant matches with sequences in the Nr, Nt, Swiss-Prot, KEGG, COG and GO databases, respectively. Through the comparative analysis between GN and GW, 12,868 genes were identified as differentially up-regulated DEGs, and 9,194 genes were identified as differentially down-regulated DEGs. Ultimately, these DEGs were mapped into different signaling pathways, including three important signaling pathways related to innate immunity responses. These results could provide new insights into crayfish antiviral immunity mechanism.