Improving Salt Stress Tolerance of Pineapple cv. Queen Using Cobalt In vitro

This investigation aimed to focus on how cobalt can avoid the damage caused by salinity stress (NaCl) on Pineapple cv. Queen in vitro. Multiplicated pineapple explants (10 – 12 mm) were subjected for eight weeks to different NaCl conc. (0, 65, 135 or 200 mM) half of them were treated firstly with 5 mg/L Cobalt sulphate. Vegetative growth parameters (no.of shoots, no. of leaves, and shoot length/explant), mineral composition (N, P, K, Na, Cl, Fe, Mn, Zn, Cu and cobalt), proline and protein content were determined. Molecular characterization using PCR based RAPD was carried out to describe the genetic differences resulted from the studied treatments, (salinity and salinity combined with cobalt sulfate). Results show that, pineapple explants growth under salt stress wasn’t prohibited completely specially below 135 mM of NaCl, but it affected negatively with the highest salt stress 200 mM of NaCl. Explants treated with cobalt before subjected to salinity scored the highest significant percentage of vegetative growth characteristics compared with those untreated. Explants treated firstly with cobalt resulted in a significantly decrease of Na+ and Cl-. Cobalt has a positive effect on Macro and Micronutrients, proline and protein content. A total of 34 DNA fragments varying from 186-1456 (bp) were amplified, of which 16 were polymorphic and seven observed as a unique markers that revealed 64.03% polymorphism.

Antibiotic resistance profile and RAPD analysis of Campylobacter jejuni isolated from vegetables farms and retail markets

Objective: To investigate antibiotic resistance profile and characterize Campylobacter jejuni (C. jejuni) isolates using random amplified polymorphic DNA (RAPD) analysis. Methods: Ninety eight C. jejuni isolates from farms and retail outlets were screened against 10 antibiotics commonly used clinically and agriculturally by using disk diffusion method. RAPD analysis was done to characterize 98 C. jejuni isolates. Results: Fifty-one percent of the isolates had multiple antibiotic resistance index 0.2 and below. This indicated that the isolates in the vegetables were not from the high risk environment or extensive farming practices. C. jejuni isolates found resistant towards penicillin G (93%), vancomycin (86%), ampicillin (35%), erythromycin (28%), genta-mycin (4%), amikacin (3%), enrofloxacin (1%), norfloxacin (1%) and no resistance to-wards ciprofloxacin. RAPD clustering analysis showed that the contamination of C. jejuni in vegetables was likely due to cross contamination at retail markets. Conclusions: C. jejuni contamination in vegetables at retail markets was due to cross contamination. Current finding proved that C. jejuni in small scale vegetables production was less expose towards antibiotic abuse.

Antibiotic resistance profile and RAPD analysis of Campylobacter jejuni isolated from vegetables farms and retail markets

Objective: To investigate antibiotic resistance profile and characterize Campylobacter jejuni (C. jejuni) isolates using random amplified polymorphic DNA (RAPD) analysis. Methods: Ninety eight C. jejuni isolates from farms and retail outlets were screened against 10 antibiotics commonly used clinically and agriculturally by using disk diffusion method. RAPD analysis was done to characterize 98 C. jejuni isolates. Results: Fifty-one percent of the isolates had multiple antibiotic resistance index 0.2 and below. This indicated that the isolates in the vegetables were not from the high risk environment or extensive farming practices. C. jejuni isolates found resistant towards penicillin G (93%), vancomycin (86%), ampicillin (35%), erythromycin (28%), gentamycin (4%), amikacin (3%), enrofloxacin (1%), norfloxacin (1%) and no resistance towards ciprofloxacin. RAPD clustering analysis showed that the contamination of C. jejuni in vegetables was likely due to cross contamination at retail markets. Conclusions: C. jejuni contamination in vegetables at retail markets was due to cross contamination. Current finding proved that C. jejuni in small scale vegetables production was less expose towards antibiotic abuse.

RAPD analysis of genetic diversity of Dioscorea opposita germplasm resources from Jiangxi and genetic stability of their plantlets / 中草药

Objective: To analyze the genetic diversity of 11 varieties of Dioscorea opposita germplasm resources from Jiangxi, and detect the genetic stability of the tissue cultured plantlets. Methods: RAPD-PCR was applied. Results: Twenty primers were screened out, 238 bands were amplified, 234 of them were polymorphic bands, the average amplified polymorphic bands were 11.7, and the ratio of polymorphic bands was 98.32%. The genetic similarity coefficient was 0.575 6-0.970 6 and the average similarity coefficient was 0.723 1. According to the results of UPGMA clustering analysis, the 11 D. opposita germplasm resources from Jiangxi province were divided into five categories: The first class included D. bulbifera. The second class included D. opposita. The third class included D. opposita Nancheng 1, D. opposita, D. opposita, D. opposite, and D. opposita, which showed that D. opposita 1, D. opposita, D. opposita and D. opposite, had closer relationship with D. opposita came from Wenxian County, Jiaozuo City, Henan province. The fourth class included D. opposita, D. opposita Nancheng 2 and D. opposita. The fifth class included D. opposita. The RAPD analysis results of plantlets subcultured for six times by in vitro rapid propagation method of stem segment with a bud of D. opposita L. germplasm resources from Jiangxi province (treatment group) and their seedlings germinated from microtuber (control group) also showed that 11 yam varieties were spread out 126-179 identifiable bands and each variety appeared 5-18 mutation bands, which indicated plantlets subcultured for six times by in vitro rapid propagation method of stem segment with a bud of D. opposita. germplasm resources from Jiangxi province existed somaclonal variation, but their genetic similarity coefficient compared with their seedlings germinated from microtuber was still relatively high, illustrating that their genetic traits were still relatively stable and did not affect their genotype. Conclusion: The experimental results can provide the reliable basis for introduction breeding, resource improvement, variety identification, germplasm conservation, and their plantlet culture of D. opposita germplasm resources from Jiangxi province.

Genetic variability of Passiflora spp. from commercial fields in the Federal District, Brazil / Variabilidade genética de Passiflora spp. em plantios comerciais do Distrito Federal, Brasil

This study aimed to characterize the genetic variability in commercial accessions of passion fruit from the Federal District, Brazil, by RAPD markers. Genetic analyses were done with leaf samples of 30 accessions. DNA samples were amplified by RAPD technique, and respective markers converted into a binary matrix, from which the genetic distances between the accessions were estimated. Clustering analyis based on genetic distances allowed to detect a wide range of genetic variabillity among the accessions of sour passion fruit, and to separate them from the two sweet passion fruit. The graphical positioning of 'BRS Ouro Vermelho' confirms its potential to improve the genetic variability of commercial varieties of sour passion fruit. Dispersal of genetic distances among commercial accessions of sour passion fruit supports evidence for different genetic origins of the materials planted in the Federal District. The verified genetic variability indicates the potential success of future breeding programs for this region.

Este estudo teve como objetivo caracterizar a variabilidade genética de acessos de maracujá comerciais no Distrito Federal por meio de marcadores RAPD. Análises genéticas foram feitas com amostras foliares de 30 acessos. As amostras de DNA foram amplificadas pela técnica de RAPD e os respectivos marcadores convertidos em uma matriz binária, a partir da qual as distâncias genéticas entre os acessos foram estimadas. Análises de agrupamento baseadas em distâncias genéticas permitiram detectar uma ampla gama de variabilidade genética entre os acessos de maracujazeiro-azedo, bem como para separá-los dos dois de maracujazeiro-doce. O posicionamento gráfico de 'BRS Ouro Vermelho' confirma a sua importante contribuição para aumentar a variabilidade genética das atuais variedades comerciais de maracujazeiro-azedo. A dispersão das distâncias genéticas entre os acessos comerciais de maracujazeiro-azedo suportam as evidências de diferentes origens genéticas para os materiais plantados no Distrito Federal. A variabilidade genética verificada evidencia o potencial de sucesso de futuros programas de melhoramento para essa região.

Identification of Dermatophytes by Mycological Tests and Random Amplified Polymorphic DNA analysis / 대한피부과학회지

BACKGROUND: Dermatophytes are usually identified based on their characteristic morphologies and physiological tests. However, identification is often delayed and problematic for atypical isolates. Recently, random amplified polymorphic DNA(RAPD) analysis was successfully performed for the identification of dermatophyes. OBJECTIVE: This study was performed to identify clinical isolates which could not be identified previously. The causes of unidentification were analysed and the merits and demerits of RAPD analysis were evaluated. METHODS: Thirty-six clinical isolates and 14 standard strains were included in this study. Seven mycological studies were performed and RAPD analysis was done by using primer OPAO-15 (5'-GAAGGCTCCC-3'). RESULTS: Based on the results of 7 mycological tests, 28 strains were confirmed as follows: 24, T. rubrum; 2, T. mentagrophytes; 2, T. raubitschekii. Four were considered as atypical strains of T. rubrum, and another 4 as non-dermatophytic moulds. This results were confirmed by RAPD analysis. CONCLUSION: RAPD analysis was useful for the identification of dermatophytes, especially the atypical strains. However, non-dermatophytic mould could not be identified by RAPD analysis. RAPD analysis was considered as a supplementary method to the conventional mycological studies for the identification of dermatophytes.

Genetic diversity of Morinda officinalis by RAPD / 中草药

Objective To investigate the genetic diversity of five populations of cultivated Morinda officinalis in Guangdong Province using random amplified polymorphic DNA(RAPD).Methods Sixty-four individuals in five populations of cultivated M.officinalis were analyzed by RAPD markers to determine the genetic variations among the populations.The data of genetic diversity were analyzed with Popgen32 software.Results The levels of genetic variation and patterns of population structure in M.officinalis were investigated using RAPD markers.Of the 100 primers screened,15 primers produced highly reproducible RAPD bands,using these primers,224 discernible DNA fragments were generated with 112(50.00%) polymorphic fragments,indicating considerable genetic variation at the species level.In contrast,there were relatively high levels of polymorphism at the population level with the percentage of polymorphic bands ranging from 37.05% to 53.13%,and the mean percentage of polymorphic loic(P=45.86%).Genetic variation among populations was detected based on Nei's genetic diversity analysis(0.175 6),Shannon's diversity index(0.287 6) for every population with Shannon's index 0.103 3—0.236 2 and Nei's indexes 0.074 5—0.154 0.Conclusion There is a little genetic differentiation among populations of cultivated M.officinalis and result in different cultivated types,the genetic diversity with M.officinalis(POP2) is higher than that of other populations.It may be the main reason of the difference of cultivated M.officinalis quality.