Species distribution and antifungal susceptibility of fungi originating from positive blood cultures in Guangdong, 2019-2021 / 中国热带医学

@#Abstract: Objective　To investigate the species distribution and the antifungal susceptibility of fungi originating from positive blood cultures in Guangdong, so as to provide a basis for the rational use of antifungal drugs in clinical fungal bloodstream infections. Methods All data were collected for retrospective study from monitoring units of the Guangdong Fungal Disease Surveillance Network between 2019-2021, including clinical characteristics, species distribution and antifungal susceptibility. Results A total of 3 589 fungi strains were isolated, most of which were Candida spp. (86.5%, 3 105/3 589). The most common species was Candida albicans (36.6%, 1 315/3 589), followed by Candida tropicalis (17.4%, 1 626/3 589) and Candida parapsilosis (14.5%, 520/3 589). There were 42.1%(1 512/3 589) of strains isolated from ICU. The proportions of Candida albicans strains were 40.0%-50.0% among ICU, general surgery, organ transplantation and emergency department. Candida tropicalis (60.0%, 144/240) was the most common species in hematology department. Both Cryptococcus neoformans (35.4%, 69/195) and Talaromyces marneffei (35.9%,70/195) were common in infection department. All of the Candida isolates were of wild-type (WT) phenotype to amphotericin B. Resistance rates of caspofungin and micafungin for Candida spp. ranged from 0.0% to 4.2%. The resistance rates of Candida tropicalis to fluconazole and voriconazole were 42.3% and 38.9%, which were significantly higher than other common Candida spp. The cryptococcus neoformans strains were totally of WT phenotype to fluconazole and voriconazole. Conclusions Candida albicans is the most common species originating from positive blood cultures in Guangdong Province. Common Candida strains are highly sensitive to echinocandins and amphotericin B. Candida tropicalis has a high resistance rate to triazole drugs.

Application of integrated species distribution models in parasitic diseases prevention and control: a review / 中国血吸虫病防治杂志

Species distribution model, a mathematical model theoretically based on the temporal and spatial locations of species in the ecosystem and their associations with other species, is useful to display the current species distribution and predict the future species distribution, which has been widely applied in ecology, biogeography and spatial transmission of infectious diseases. Integrated species distribution model is a comprehensive, summative and reliable combination model that simultaneously uses multiple species distribution models or integrates multiple data sources for modeling. This review describes the theory and classification of species distribution models, and summarizes the creation and verification of integrated species distribution models and their applications in parasitic disease prevention and control. During the practical applications of integrated species distribution models, the study scale, niche matching, big data utilization, combination of multidisciplinary methods and knowledge background and ecological implications should be emphasized.

Conservation of the Black-collared Swallow, Pygochelidon melanoleuca (Wied, 1820) (Aves: Hirundinidae) in Brazil: potential negative impacts of hydropower plants / Conservação da andorinha-de-coleira, Pygochelidon melanoleuca (Wied, 1820) (Aves: Hirundinidae) no Brasil: potenciais impactos negativos das hidrelétricas

Abstract: We analyzed the overlap of the range of Pygochelidon melanoleuca in Brazil with active and planned hydropower plants in the country (current and future scenarios). We used the Random Forest, Maxent and Support Vector Machine algorithms to model the potential range of the species, which we then overlapped with the locations of active and planned hydropower plants in order to calculate how much the potential area of this species is and will be affected by them. Approximately 35% of active hydropower plants currently overlap with the potential distribution area of P. melanoleuca, and 44% of planned hydropower plants also coincide with this area. If the implementation of the planned hydropower plants occurs, the suitable habitat necessary for nesting and foraging of P. melanoleuca will be severely compromised.

Resumo: Analisamos a sobreposição da distribuição de Pygochelidon melanoleuca no Brasil com hidrelétricas ativas e planejadas no país (cenário atual e futuro). Utilizamos os algoritmos Random Forest, Maxent e Support Vector Machine para modelar a distribuição potencial da espécie, então sobrepomos com os locais das usinas hidrelétricas ativas e planejadas para calcular o quanto a área potencial desta espécie é e será afetada por elas. Aproximadamente 35% das hidrelétricas ativas estão sobrepostas com a área de distribuição potencial de P. melanoleuca e 44% das hidrelétricas planejadas coincidem com sua área. Se a implementação das hidrelétricas planejadas ocorrer, o habitat necessário para nidificação e forrageamento de P. melanoleuca estarão severamente comprometidos.

Construction of a forecast system for prediction of schistosomiasis risk in China based on the flood information / 中国血吸虫病防治杂志

Objective To create a model based on meteorological data to predict the regions at risk of schistosomiasis during the flood season, so as to provide insights into the surveillance and forecast of schistosomiasis. Methods An interactive schistosomiasis forecast system was created using the open-access R software. The schistosomiasis risk index was used as a basic parameter, and the species distribution model of Oncomelania hupensis snails was generated according to the cumulative rainfall and temperature to predict the probability of O. hupensis snail distribution, so as to identify the regions at risk of schistosomiasis transmission during the flood season. Results The framework of the web page was built using the Shiny package in the R program, and an interactive and visualization system was successfully created to predict the distribution of O. hupensis snails, containing O. hupensis snail surveillance site database, meteorological and environmental data. In this system, the snail distribution area may be displayed and the regions at risk of schistosomiasis transmission may be predicted using the species distribution model. This predictive system may rapidly generate the schistosomiasis transmission risk map, which is simple and easy to perform. In addition, the regions at risk of schistosomiasis transmission were predicted to be concentrated in the middle and lower reaches of the Yangtze River during the flood period. Conclusions A schistosomiasis forecast system is successfully created, which is accurate and rapid to utilize meteorological data to predict the regions at risk of schistosomiasis transmission during the flood period.

The effectiveness of protected areas in the Paraná-Paraguay basin in preserving multiple facets of freshwater fish diversity under climate change

Our objective was to evaluate the effectiveness of protected areas (PAs) in the Paraná-Paraguay basin on multiple facets of ichthyofauna, both currently and in future climate change scenarios, based on reaching the 17% of conserved terrestrial and inland water defined by Aichi Target 11. Analyses were carried out vis-à-vis a distribution of 496 native species, modeling for the present and for the future, and in moderate and pessimistic scenarios of greenhouse gases. We calculated species richness, functional richness, and phylogenetic diversity, overlapping the combination of these facets with the PAs. The results indicate that the current PAs of the Paraná-Paraguay basin are not efficient in protecting the richest areas of ichthyofauna in their multiple facets. While there is a larger overlap between PAs and the richest areas in phylogenetic diversity, the values are too low (2.37%). Currently, the overlap between PAs and areas with larger species richness, functional richness, and phylogenetic diversity is only 1.48%. Although this value can increase for future projections, the values of the indices decrease substantially. The relevant aquatic environments, biological communities, and climate change should be considered as part of the systematic planning of PAs that take into consideration the terrestrial environments and their threats.(AU)

Nosso objetivo foi avaliar a efetividade das áreas protegidas da bacia Paraná-Paraguai sobre múltiplas facetas da ictiofauna, atualmente e em cenários futuros de mudanças climáticas baseado em alcançar 17% de áreas protegidas, de acordo com os objetivos de Aichi. Análises foram feitas a partir da distribuição de 496 espécies para o presente e futuro, em diferentes cenários climáticos. Foram calculadas a riqueza de espécies, a riqueza funcional e a diversidade filogenética, sobrepondo a combinação destas facetas com as áreas protegidas. Os resultados indicaram que as áreas protegidas da bacia Paraná-Paraguai não são eficientes em proteger as áreas mais ricas em ictiofauna considerando diversas facetas. A maior sobreposição se dá entre as áreas protegidas e as áreas mais ricas em diversidade filogenética, mas os valores são muito baixos (2,37%). A sobreposição entre as áreas protegidas e os 17% das áreas com maior riqueza de espécies, riqueza funcional e diversidade filogenética é de apenas 1,48%. Para o futuro as projeções indicaram que a sobreposição pode aumentar, mas os valores dos índices caem consideravelmente. Os ambientes aquáticos e as mudanças climáticas são componentes que devem ser considerados no planejamento sistemático de áreas protegidas que consideram essencialmente ambientes terrestres e suas ameaças.(AU)

Will global change modify the distribution of the Anadenanthera colubrina (Fabales: Fabaceae) plant, a key species in dry tropical forest?

Introduction: Seasonally dry tropical forests (SDTF) are one of the most threatened terrestrial ecosystems on the planet as a consequence of global change. They harbor high biodiversity and provide a wide range of ecosystem services; therefore, their conservation is a priority worldwide. Climate warming, as well as land use patterns, are leading to species distribution range shifts. Objective: The objective of this work was to study the current and future potential distribution of a SDTF representative tree species (Anadenanthera colubrina) in the Argentinian Sub Andean Piedmont nucleus and to assess the effects of land use and climate changes. Methods: Current and future potential distribution was modeled with Maxent, using 49 presence points and 20 variables. Climate change effects were estimated in four different temperature and carbon dioxide concentration scenarios. Land use changes were determined subtracting the deforested area until 2017 to the current and future potential distribution of the species. Results: A. colubrina current distribution represents 18 % of Northwestern Argentina. Land use changes decreased almost 25 % of it and climate change will probably cause a retraction in the East and a slight expansion towards the West and South of the current distribution. The synergistic effect of land use and climate change projected to the worst scenario would reduce 63 % of its current distribution. Conclusions: Our data demonstrate the central role of distribution range studies to assess the effects of anthropic activities. Climate change and land use change would have a negative and synergistic effect on the distribution of A. colubrina. Although a possible expansion of the Sub Andean Piedmont nucleus of SDTF would occur, this expansion may be limited by the Sub Andean mountain range that could act as an orographic barrier.

Introducción: Los Bosques Tropicales Estacionalmente Secos (BTES) son unos de los ecosistemas terrestres más amenazados del planeta como consecuencia del cambio global. Estos bosques albergan una alta biodiversidad y proporcionan una amplia gama de servicios ecosistémicos, por lo que su conservación es una prioridad a nivel mundial. El cambio climático y el cambio en los usos del suelo están afectando la distribución de las especies. Objetivo: El objetivo de este trabajo fue estudiar la distribución potencial de una especie representativa de BTES (Anadenanthera colubrina) en el núcleo del Piedemonte subandino argentino y evaluar los efectos del cambio en los usos del suelo y del cambio climático sobre su distribución. Métodos: La distribución actual y futura de A. colubrina fue modelada con Maxent, utilizando 49 puntos de presencia y 20 variables. Los efectos del cambio climático se estimaron en cuatro escenarios que difieren en los niveles de temperatura y concentración de dióxido de carbono. Los efectos del cambio en el uso del suelo se estimaron descontando el área deforestada hasta el 2017 a la distribución actual y futura de la especie. Resultados: La distribución actual de A. colubrina representa un 18 % del Noroeste Argentino. Los cambios en el uso del suelo produjeron una disminución del 25 % del área de distribución actual y el cambio climático probablemente causará una retracción al Este y una expansión hacia el oeste y sur de su distribución. El efecto sinérgico del cambio en el uso del suelo y el cambio climático podría producir una pérdida del 63 % considerando el peor escenario de cambio climático. Conclusiones: Nuestros datos demuestran el rol fundamental de los estudios de distribución para evaluar los efectos de las actividades antrópicas. Los cambios en los usos del suelo y el cambio climático podrían tener un efecto negativo y sinérgico sobre la distribución de A. colubrina. La posible expansión del núcleo Piedemonte de SDTF hacia el oeste y el sur de la región no estaría limitada por cambios en el uso del suelo, aunque las cadenas montañosas podrían actuar como barreras orográficas y limitar la expansión.

Using distribution models to estimate blooms of phytosanitary cyanobacteria in Brazil / Usando modelos de distribuição para estimar florações de cianobactérias fitossanitárias no Brasil

Abstract: The multiple uses of aquatic ecosystems by humankind and the continuous interference of their activities have contributed to the emergence of potentially toxic cyanobacteria blooms. Here, we firstly created a database of occurrences of cyanobacteria blooms in Brazil through a systematic review of the scientific literature available in online platforms (e.g. Web of Science, Capes Thesis Catalogue). Secondly, we carried out ecological niche models with occurrence data obtained from these studies to predict climatically suitable areas for blooms. We select 21 bioclimatic variables input environmental data. We used five modeling methods for the current climate scenario: (1) Maxent; (2) Support Vector Machines; (3) Random Forest; (4) Maximum Likelihood e (5) Gaussian. We found that the number of publications about bloom events was higher in 2009 with a decline in the years 2012, 2013 and 2017. Furthermore, the years with the higher records of blooms in freshwater environments were 2005, 2011 e 2014. These events occurring mainly in public supply reservoirs and are mostly of the genera Microcystis Lemmermann, 1907, Dolichospermum (Ralfs ex Bornet & Flahault) P.Wacklin, L.Hoffmann & J.Komárek, 2009 and Raphidiopsis F.E.Fritsch & F.Rich, 1929. Modeling the potential distribution of blooms, we found sampling gaps that should be targeting for future researches, especially in the Amazon biome. Overall, the models did not predict highly suitable areas in the /north of Brazil, while other regions were relatively well distributed with a higher number of occurrence records in the Southeast region.

Resumo: Os múltiplos usos dos ecossistemas aquáticos pela humanidade e a contínua interferência das suas atividades têm contribuído para o surgimento de florações de cianobactérias potencialmente tóxicas. Aqui, primeiramente criamos um banco de dados de ocorrências de floração de cianobactérias no Brasil por meio de uma revisão sistemática da literatura científica disponível em plataformas on-line (por exemplo, Web of Science, Catálogo de Teses da Capes). Em segundo lugar, realizamos modelos de nicho ecológico com dados de ocorrência obtidos a partir desses estudos para prever áreas climaticamente adequadas para as florações. Selecionamos 21 variáveis bioclimáticas como dados ambientais de entrada. Usamos cinco métodos de modelagem diferentes para no cenário climático atual: (1) Maxent; (2) Support Vector Machines; (3) Random Forest; (4) Maximum Likelihood e (5) Gaussian. Encontramos que o número de publicações sobre eventos de floração foi maior em 2009 com um declínio nos anos de 2012, 2013 e 2017. Além disso, os anos com os registros mais altos de florescimento em ambientes de água doce foram 2005, 2011 e 2014. Esses eventos ocorrem principalmente em reservatórios de abastecimento público e são na sua maioria dos gêneros Microcystis Lemmermann, 1907, Dolichospermum (Ralfs ex Bornet & Flahault) P.Wacklin, L.Hoffmann & J.Komárek, 2009 e Raphidiopsis F.E.Fritsch & F.Rich, 1929. Modelando a distribuição potencial das florações, encontramos lacunas de amostragem que devem ser direcionadas para futuras pesquisas, especialmente no bioma Amazônia. Em geral, os modelos não previram áreas altamente adequadas no norte do Brasil, enquanto outras regiões estavam relativamente bem distribuídas com um número maior de registros de ocorrência na região Sudeste.

Mapping the habitat suitability of Andira humilis Mart. ex Benth. (Fabaceae) as a means to detect its associated galling species in Brazil

Host plant species have very specific interconnection with galling species. Here, we estimate the potential distribution of the host plant species Andira humilis Mart. ex Benth. (Fabaceae) to consequently locate the potential distribution ranges of its galling species Lopesia andirae Garcia, Lima, Calado, and Guimarães (2017) based on ecological requirements. The ecological niche model was built using Maxent v.3.4.1k, an algorithm that estimates species’ distributions. We found suitable habitats for L. andirae encompassing areas of the Cerrado, Caatinga and Atlantic Forest. Annual mean temperature (70.2%) and temperature annual range (13.9%) were the most critical factors shaping A. humilis and necessarily L. andirae. Our results can guide taxonomists and ecologists regarding the delineation of sampling areas as well as conservation strategies for this ecological interaction.

Redescription of the snake Lachesis melanocephala (Squamata: Viperidae): Designation of a neotype, natural history, and conservation status

Introduction: The Black-headed Bushmaster (Lachesis melanocephala) is a large venomous snake that inhabits tropical moist forest, wet forest, montane and premontane wet forest in Southwestern Costa Rica and extreme Western Panama. Objective: We assign a neotype for the species due to the loss of the original holotype and update the information on its geographical distribution, natural history, and conservation status. Methods: To determine the conservation status of L. melanocephala, we modeled its potential distribution using the species` locality records and distribution modeling analysis implemented in MaxEnt. Based on the species' potential distribution, we evaluate the loss of its original habitat and estimate the percentage of its distribution area that is currently protected by the country's protected area system. Results: The potential distribution of the species was estimated at 10 139 km2, including areas where the species currently occurs and historical areas where the species has been registered but is nowadays considered locally extinct. About 29 % of that potential distribution overlaps with protected wild areas, so less than a third of the potential distribution of the species is under protection. Conclusions: During the last decade, accelerated habitat loss and growing evidence of declining natural populations indicate the need for urgent protective measures to prevent the extinction of this species in the foreseeable future.

Introducción: La serpiente Plato Negro (Lachesis melanocephala) es una especie venenosa de gran tamaño, endémica de los bosques lluviosos del Pacífico sur y suroeste de Costa Rica y el extremo oeste de Panamá. Objetivo: Se asigna un neotipo para la especie debido a la pérdida del holotipo original y se presentan datos actualizados de su distribución geográfica, historia natural y estado de conservación. Métodos: Para determinar el estado de conservación de L. melanocephala, reconstruimos su distribución potencial utilizando los registros de localidad de la especie y el análisis de modelado de distribución implementado en MaxEnt. En función de la distribución potencial de la especie, evaluamos la pérdida de su hábitat original y calculamos el porcentaje de su área de distribución que actualmente está protegida por el sistema de áreas protegidas del país. Resultados: La distribución potencial de la especie se estimó en 10 139 km2, incluyendo áreas donde la especie se encuentra actualmente y áreas históricas donde la especie se ha registrado, pero se considera localmente extinta. Cerca del 29 % de esa distribución potencial se traslapa con áreas silvestres protegidas, por lo que menos de una tercera parte de la distribución potencial de la especie está bajo protección. Conclusiones: La degradación acelerada de su hábitat y la disminución evidente de sus poblaciones durante la última década señalan la necesidad de tomar medidas urgentes de protección para evitar el riesgo de extinción a corto plazo o mediano plazo.

Abiotic factors drives floristic variations of fern's metacommunity in an Atlantic Forest remnant / Fatores abióticos regulam as variações florísticas na metacomunidade de samambaias em um remanescente de Floresta Atlântica

Abstract We analyzed floristic variations in fern's metacommunity at the local scale and their relationship with abiotic factors in an Atlantic Forest remnant of northeastern Brazil. Floristic and environmental variations were accessed on ten plots of 10 × 20 m. We performed cluster analyses, based on Bray-Curtis dissimilarity index to establish the floristic relationship. The influence of abiotic factors: luminosity, temperature, relative air humidity and relative soil moisture was evaluated from a redundancy analysis. We found 24 species belonging to 20 genera and 12 families. The fern's flora showed high floristic heterogeneity (>75% for most of the plot's associations). The fern's metacommunity was structured along an abiotic gradient modulated by temperature, luminosity, and relative soil moisture.

Resumo Analisamos as variações florísticas na metacomunidade de samambaias em escala local e sua relação com fatores abióticos em um remanescente de Floresta Atlântica no Nordeste do Brasil. Variações florísticas e ambientais foram acessadas a partir de dez parcelas de 10 × 20 m. Realizamos análises de cluster, baseado no índice de similaridade de Bray-Curtis para estabelecer relações florísticas. A influência de fatores abióticos: luminosidade, temperatura, umidade relativa do ar e umidade relativa do solo foram avaliadas a partir da análise de redundância. Encontramos 24 espécies pertencentes a 20 gêneros e 12 famílias. A flora de samambaias exibiu uma elevada heterogeneidade florística (>75% para a maioria das associações entre plots). Observou-se que a metacomunidade de samambaias estava estruturada ao longo de um gradiente abiótico modulado pela temperatura, luminosidade e umidade relativa do solo.

Eastern extension of the geographic range of Mico emiliae / Extensão oriental da distribuição geográfica de Mico emiliae

The distribution of the callitrichids inhabiting the Tapajós-Xingu interfluvium is still poorly understood, probably because of the limited number of studies in this remote region. Mico emiliae is a callitrichid endemic to Brazil, occurring between the Jamanxim and Teles Pires rivers, and Serra do Cachimbo in the west and Iriri River in the east, in the states of Pará and Mato Grosso. However, its current distribution is still uncertain. After ca. 430-km surveys in Serra do Pardo National Park, we successfully confirmed the occurrence of this species for the first time approximately 180 km east of its previously known eastern limit in Pará. Our records expand the distribution of M. emiliae to the left bank of the Xingu River, increasing the known extent of its occurrence by 83%.

A distribuição dos calitriquídeos que habitam o interflúvio Tapajós-Xingu ainda é pouco conhecida, provavelmente devido ao limitado número de estudos que ocorreram nesta região remota. Mico emiliae é um calitriquídeo endêmico do Brasil que ocorre na região limitada pelos rios Jamanxim e Teles Pires e pela Serra do Cachimbo ao oeste e Rio Iriri ao leste, nos estados do Pará e Mato Grosso. Entretanto, sua distribuição ainda é incerta. Após ca. 430 km de levantamentos no Parque Nacional da Serra do Pardo, nós confirmamos a ocorrência desta espécie pela primeira vez aproximadamente 180 km ao leste de seu limite oriental reconhecido no Pará. Esses novos registros expandem a distribuição de M. emiliae até a margem esquerda do rio Xingu, aumentando sua extensão de ocorrência em 83%.

Riqueza potencial de las especies de ranas y mariposas diurnas en tres unidades biogeográficas del nororiente de Colombia: implicaciones para la conservación / Potential species richness of frogs and diurnal butterflies in three biogeographical units from northeastern colombia: conservation implications

ABSTRACT We present an estimation of the potential species richness of frogs, and diurnal butterflies distributed in the departments of Norte de Santander and Santander, Colombia, and analyze the implications for conservation of such high Andean species. From June 2012 to May 2016, we sampled across the Almorzadero, Santurbán and Tamá biogeographical units to gather presence data of 7 anuran species and 29 butterflies species from the superfamily Papilionoidea. We modeled the potential distribution of each species, converted every model to binary, and the sum up of unique species per cell allowed to estimate the model of potential richness, generating the total number of species for every 1 km2 cell. Every model was validated against field data, vegetation cover, and altitude. Our results suggest the existence of species' concentration zones, specifically in the places of convergence between biogeographical units; it was evident the high levels of data deficiency in some places. Finally, it was clear the importance of these zones as a continuum of biogeographic conditions to maintain the biological diversity.

RESUMEN Presentamos una estimación de la riqueza potencial y las implicaciones para la conservación de especies altoandinas de anuros y de mariposas diurnas, distribuidas en los departamentos de Norte de Santander y Santander. Durante junio de 2012 y mayo de 2016 se realizaron muestreos de campo en las unidades biogeográficas de Almorzadero, Santurbán y Tamá, para registrar los datos de presencia de siete especies de anfibios del orden Anura y 29 de mariposas de la superfamilia Papilionoidea. Realizamos modelamientos de la distribución potencial de cada especie, convertimos cada modelo en binario, y la suma de especies únicas por celda permitió estimar el modelo de riqueza potencial, obteniendo el número total de especies por cada celda de 1 km2; a su vez, los modelos fueron superpuestos sobre información de campo, cobertura vegetal y altitudinal. Nuestros resultados sugieren que existen zonas concretas de concentración de especies en las zonas de convergencia entre las unidades biogeográficas, así como zonas con vacíos de información. Resaltamos la importancia de estas zonas como un continuo de condiciones biogeográficas para mantener la diversidad.

Predicting the distribution of Omalonyx (Mollusca: Pulmonata: Succineidae) species from literature review, museum databases and new sampling efforts in Brazil / Predição da distribuição de Omalonyx (Mollusca: Pulmonata: Succineidae) a partir da revisão da literatura, dados de museu e novo esforço amostral no Brasil

Abstract Accurate distributional information is crucial for studies on systematics, biodiversity and conservation. To improve the knowledge regarding the geographical distribution of Omalonyx in South America, we present updated information based on data from a literature review, institutional collections and malacological surveys. All this information composed the dataset used to predict species distribution employing the Maximum Entropy Algorithm (MaxEnt). The model was run using data on species distribution, altitude and bioclimatic variables (WorldClim database). The model had consistent performance, and areas presenting similar conditions to areas where the species were recorded were considered areas of occurrence. The predicted occurrence areas included those that were already surveyed and those that are considered potential occurrence areas. The results demonstrate that the genus has widespread distribution in the Neotropical region and occurs in the tropical, temperate and arid regions of South America and Lesser Antilles. Omalonyx spp. were recorded in all South American countries and hydrographic regions. However, in some countries, there were only isolated records (ex: Colombia and Ecuador). Here, we also present the first record of Omalonyx spp. in four Brazilian States (Acre, Rondônia, Piaui, and Amapá). The genus was found in all hydrographic regions within Brazil and among 27 federative unities; it was absent from only two unities (Roraima State and Distrito Federal). This work contributes to the knowledge on Omalonyx spp. distribution and provides an important basis for the work of ecologists and taxonomists.

Resumo A informação precisa sobre a distribuição é crucial para os estudos sobre sistemática, biodiversidade e conservação. Para melhorar o conhecimento sobre a distribuição geográfica de Omalonyx na América do Sul, apresentamos informações atualizadas com base em dados de revisão de literatura, coleções institucionais e pesquisas malacológicas. Toda essa informação compôs o conjunto de dados usado para predição da distribuição de espécies empregando o Algoritmo de Entropia Máxima (MaxEnt). O modelo foi executado usando dados de distribuição de espécies, altitude e variáveis bioclimáticas (banco de dados WorldClim). O modelo apresentou um desempenho consistente e as áreas que apresentaram condições semelhantes às áreas onde as espécies foram registradas, foram consideradas áreas de ocorrência. As áreas de ocorrências previstas incluíram aquelas que já foram pesquisadas e aquelas que são consideradas áreas de ocorrência potencial. Os resultados demonstram que o gênero tem uma distribuição Neotropical ampla e que ocorre nas regiões tropical, temperada e árida da América do Sul e nas Pequenas Antilhas. Omalonyx spp. foram registradas em todos os países e bacias sul-americanas. No entanto, em alguns países, apenas registros isolados foram encontrados (ex: Colômbia e Equador). Aqui, também apresentamos o primeiro registro de Omalonyx spp. em quatro estados brasileiros (Acre, Rondônia, Piauí e Amapá). O gênero foi encontrado em todas as regiões hidrográficas no Brasil e nas 27 unidades federativas; sendo ausente em apenas duas unidades federativas (Estado de Roraima e Distrito Federal). Esse trabalho contribui para o conhecimento da distribuição das espécies de Omalonyx e fornece uma importante base para trabalhos de ecólogos e taxonomistas.

The bats of Rio Grande do Norte state, northeastern Brazil / Morcegos do estado do Rio Grande do Norte, nordeste do Brasil

Abstract Rio Grande do Norte is one of the smallest states in Brazil but has a rich diversity of ecosystems, including Caatinga vegetation, remnants of Atlantic Forest, coastal habitats, mangroves and large karstic areas with caves. However, its chiropteran fauna is little known, and the state contains conspicuous gaps of information on the occurrence and distribution of bats in Brazil. In order to reduce this information gap, based on a review of scientific literature and regional mammal collections, we list 42 species of bats, including new occurrences for 13 species and discussion on their conservation status. Results show that more than half (54%) of the recorded species are phyllostomid bats, and about one third of the bats in the state roosts in underground cavities. The Caatinga harbored the highest bat richness in the state, including the occurrence of four vulnerable species (Furipterus horrens, Lonchorhina aurita, Natalus macrourus and Xeronycteris vieirai). The Atlantic Forest needs to be more sampled, including mangroves, coastal habitats and areas of Caatinga in the central region of the state (Borborema highlands), which are virtually unsurveyed. Although the recent increase of studies on bats in the state, future studies should complement conventional mistnetting with active roost search and bioacoustical records in order to obtain better data for unraveling the bat fauna of Rio Grande do Norte.

Resumo O Rio Grande do Norte é um dos menores estados do Brasil, mas possui grande diversidade de ecossistemas, incluindo vegetação de Caatinga, Mata Atlântica, habitats costeiros, manguezais e grandes áreas cársticas com cavernas. No entanto, a fauna de quirópteros é pouco conhecida, e o estado contém lacunas importantes sobre a ocorrência e distribuição de morcegos no Brasil. Para reduzir essa lacuna de informação, com base em uma revisão da literatura científica e coleções regionais de mamíferos, listamos 42 espécies de morcegos, incluindo novas ocorrências para 13 espécies e discusões sobre seu estado de conservação. Os resultados mostram que mais de metade (54%) das espécies registradas são morcegos filostomídeos e cerca de um terço dos morcegos no estado se abrigam em cavidades subterrâneas. A Caatinga abrigou a maior riqueza de morcegos no estado, incluindo a ocorrência de quatro espécies vulneráveis (Furipterus horrens, Lonchorhina aurita, Natalus macrourus e Xeronycteris vieirai). A Mata Atlântica precisa ser mais amostradas, incluindo manguezais, habitats costeiros e áreas de Caatinga principalmente na região central do estado (planalto da Borborema), que são virtualmente inexplorados. Embora o recente aumento das investigações no estado em relação aos morcegos, estudos futuros devem complementar os métodos convencionais de captura com procura ativa de abrigos e monitoramento bioacústico para obter melhores dados na tarefa de desvendar a diversidade de morcegos do Rio Grande do Norte.

Sampling procedures for inventory of commercial volume tree species in Amazon Forest

ABSTRACT The spatial distribution of tropical tree species can affect the consistency of the estimators in commercial forest inventories, therefore, appropriate sampling procedures are required to survey species with different spatial patterns in the Amazon Forest. For this, the present study aims to evaluate the conventional sampling procedures and introduce the adaptive cluster sampling for volumetric inventories of Amazonian tree species, considering the hypotheses that the density, the spatial distribution and the zero-plots affect the consistency of the estimators, and that the adaptive cluster sampling allows to obtain more accurate volumetric estimation. We use data from a census carried out in Jamari National Forest, Brazil, where trees with diameters equal to or higher than 40 cm were measured in 1,355 plots. Species with different spatial patterns were selected and sampled with simple random sampling, systematic sampling, linear cluster sampling and adaptive cluster sampling, whereby the accuracy of the volumetric estimation and presence of zero-plots were evaluated. The sampling procedures applied to species were affected by the low density of trees and the large number of zero-plots, wherein the adaptive clusters allowed concentrating the sampling effort in plots with trees and, thus, agglutinating more representative samples to estimate the commercial volume.

Ecology Suitability Study of Gentiana rhodantha in Yunnan-Guizhou Plateau / 中国药学杂志

OBJECTIVE: To predict the potential geographical distribution of Gentiana rhodantha and study the relationship between species distribution, chemical compounds content and ecological factors in Yunnan-Guizhou Plateau. METHODS: MaxEnt modeling combined with geographic information system (GIS) was used to predict the potential geographical distribution of G. rhodantha. Ultra performance liquid chromatography (UPLC)was used to establish the UPLC fingerprints of different parts of medicinal materials. Pearson correlation analysis and stepwise regression analysis were used to analyze the relationship between various chemical compounds and ecological factors. RESULTS: The AUC of the ROC curves of the training data and test data were 0.919 and 0.915, respectively, which indicated that the predictive results with the maximum model were highly precise and exact. The results of species distribution modeling showed that the main environmental factors determining the potential distribution were annual temperature range (the most suitable range: 16.0-27.0℃), mean diurnal range (the most suitable range: 8.5-11.6℃), average monthly precipitation of June (the most suitable range: 200-400 mm), average monthly precipitation of September (the most suitable range: 90-125 mm), average monthly maximum temperature of June (the most suitable range: 21.0-27.0℃), temperature seasonality (the most suitable range: 4 000-5 200), average monthly precipitation of October (the most suitable range: 65-110℃), average monthly minimum temperature of July (the most suitable range: 14.5-20.5℃), average monthly maximum temperature of January (the most suitable range: 14.5-25.5℃), subsoil pH (the most suitable range: pH<5), and average monthly precipitation of April (the most suitable range: 14.5-25.5 mm). Correlation analysis showed that the contents of mangiferin, total compounds and their ratios of aerial part and underground part had significant relationship with temperature, precipitation and hysico-chemical properties of top soil (P<0.05 or P<0.01) and had significant negative (P<0.05) or most significant negative relationship with habitat suitability (P<0.01). The variation of temperature and precipitation of June to August and subsoil pH subsoil CEC were the key ecological factors of accumulation of the chemical compounds in G.rhodantha. CONCLUSION: The best growing areas for G. rhodantha are mainly located in Middle and West Yunnan, Southeast and South Guizhou.

Abiotic factors drives floristic variations of ferns metacommunity in an Atlantic Forest remnant

Abstract We analyzed floristic variations in ferns metacommunity at the local scale and their relationship with abiotic factors in an Atlantic Forest remnant of northeastern Brazil. Floristic and environmental variations were accessed on ten plots of 10 × 20 m. We performed cluster analyses, based on Bray-Curtis dissimilarity index to establish the floristic relationship. The influence of abiotic factors: luminosity, temperature, relative air humidity and relative soil moisture was evaluated from a redundancy analysis. We found 24 species belonging to 20 genera and 12 families. The ferns flora showed high floristic heterogeneity (>75% for most of the plots associations). The ferns metacommunity was structured along an abiotic gradient modulated by temperature, luminosity, and relative soil moisture.

Resumo Analisamos as variações florísticas na metacomunidade de samambaias em escala local e sua relação com fatores abióticos em um remanescente de Floresta Atlântica no Nordeste do Brasil. Variações florísticas e ambientais foram acessadas a partir de dez parcelas de 10 × 20 m. Realizamos análises de cluster, baseado no índice de similaridade de Bray-Curtis para estabelecer relações florísticas. A influência de fatores abióticos: luminosidade, temperatura, umidade relativa do ar e umidade relativa do solo foram avaliadas a partir da análise de redundância. Encontramos 24 espécies pertencentes a 20 gêneros e 12 famílias. A flora de samambaias exibiu uma elevada heterogeneidade florística (>75% para a maioria das associações entre plots). Observou-se que a metacomunidade de samambaias estava estruturada ao longo de um gradiente abiótico modulado pela temperatura, luminosidade e umidade relativa do solo.

Correlation between host animal and hemorrhagic fever with renal syndrome in Qingdao City of Shandong Province from 2011 to 2015 / 中华地方病学杂志

Objective To investigate the influence of host animals on epidemics of hemorrhagic fever with renal syndrome (HFRS) so as to provide a basis for effective control of HFRS.Methods From the national infectious disease network direct reporting system,the incidence of HFRS cases diagnosed by direct diagnosis of medical institutions in Qingdao was collected from 2011-2015.We captured rats indoor and outdoor by night trapping method quarterly and calculated the capture rates from 2011-2015 in Qingdao areas.The incidence of HFRS in different regions and the change of seasonal growth,the distribution of host animals,the characteristics and distribution of animals,and the seasonal variation of dominant species were analyzed and a database was set up and statistic analysis was conducted by SPSS 13.0.Results The peak incidence rate of HFRS in Qingdao areas occurred in 2012 (3.54/100 000) and presented a decrease trend year by year (x2 =64.15,P ＜ 0.05),but there were different characteristics among the epidemic areas,and lowest in 2015 (1.68/100 000).And the peak presented a two-peak pattern which was mainly an autumn peak and a gentle peak in late spring and early summer.The epidemics were gradually decreased from the rural areas to the urban fringes and then the urban areas.The seasonal variation was disappeared gradually.There was a heavy epidemic intensity in areas with a high capture rate and a complex type of host animals.The epidemic peak was in consistence with the distribution of rats.Capture rates were different among the epidemic areas.The capture rate in Jiaonan was the highest [5.32％(2 886/54 287)] and lowest in Pingdu [1.77％ (258/14 584)].The mean (x2 =820.39,P ＜ 0.05) and annual capture rates (x22011-2015 =32.61,356.24,233.07,129.33,33.42,all P ＜ 0.05) among epidemic areas were different.In the third quarter the accumulated capture rate was the highest [4.69％ (1 187/25 301)].In total 8 kinds of host animals were captured and the dominant species were brown rat [30.27％ (1 235/4 080)],house mouse[29.75％ (1 214/4 080)] and striped field mouse [16.25％ (663/4 080)].Conclusions The epidemic intensity of HFRS is related to the densities and the types of host animals.The gradually decreased epidemic pattern from the rural areas to the urban fringes and then the urban areas may be related to urbanization and improved health behaviors.

Distribución geográfica y hábitat de la familia Trochilidae (Aves) en el estado de Guerrero, México / Geographical distribution and habitat of Trochilidae (Aves) in the state of Guerrero, Mexico

ResumenLa distribución y abundancia de la familia Trochillidae generalmente estan influenciadas por la floración y fenología de las plantas de las que se alimentan, principalmente en bosques primarios, por lo que los cambios en la cobertura de la vegetación pueden afectar a sus poblaciones. Se analizó la distribución geográfica y se caracterizó el hábitat para 22 especies residentes de colibríes presentes en el estado de Guerrero con base en el uso de suelo y vegetación de INEGI Serie IV (2007-2010). Los modelos de distribución se generaron con ayuda del Algoritmo Genético para la Producción de Conjuntos de Reglas (GARP), usando los registros históricos de colecciones científicas y trabajo de campo (2001-2009), en combinación con variables climáticas y topográficas. De las 22 especies modeladas, seis son endémicas a México, mismo número de especies que se encuentran en alguna categoría de riesgo. La mayor concentración potencial de la riqueza (14-20 especies), endemismo (5-6 especies) y especies en riesgo de colibríes (5-6 especies) está en la provincia biótica de la Sierra Madre del Sur. No obstante, la distribución potencial de la mayor parte de los colibríes se presenta en ambientes alterados o agroecosistemas resultado de los cambios en el uso del suelo. Solo en el caso de Campylopterus hemileucurus, Lamprolaima rhami y Heliomaster longisrostris, su distribución potencial es mayor en áreas de vegetación primaria. Las áreas de mayor concentración de colibríes no corresponden con las Áreas de Importancia para la Conservación de las Aves en Guerrero, lo que confirma que pese a su diversidad y su extrema popularidad, desde la perspectiva conservacionista los colibríes han recibido relativamente poca atención.

AbstractThe distribution and abundance of species of Trochillidae family is usually influenced by the flowering and phenology of plants used as a feeding source, mainly in primary forest, so that changes in vegetation cover could impact their populations. We analyzed and characterized the geographical distribution and habitat for 22 species of resident hummingbirds in the state of Guerrero using the vegetation and the land use map of INEGI Series IV (2007-2010). Distribution models were generated with the Genetic Algorithm for Rule Set Production (GARP), using historical records of scientific collections and fieldwork (2001-2009), in combination with climatic and topographic variables. Of the 22 modeled species, six are endemic to Mexico, the same number of species found in a risk category. The highest concentration with regards to richness (14-20 species), endemism (5-6 species) and number of threatened species of hummingbirds (5-6 species) occurred in the biotic province of Sierra Madre del Sur. However, the potential distribution of most of the hummingbirds occurred in disturbed sites or agroecosystems, as a result of changes in land-use. For Campylopterus hemileucurus, Lamprolaima rhami and Heliomaster longisrostris, their potential distribution was highest in areas of primary vegetation. Areas of high hummingbirds presence do not coincide with the Important Bird Areas proposed for bird conservation in Guerrero, considering that, despite its diversity and its extreme popularity, from the conservation perspective hummingbirds have received relatively little attention. Rev. Biol. Trop. 64 (1): 363-376. Epub 2016 March 01.

Species distribution and drug-resistance analysis of urinary fungal infections in older adults / 中华老年医学杂志

Objective To analyze the detection rates,species distribution and drug-resistance of urinary fungal infection in elderly patients at Beijing Hospital from 2011 to 2013,in order to provide the basis for the reasonable clinical use of anti-epiphyte medicines.Methods Totally 263 patients with an average of 79.6 years old were collected from Beijing Hospital.The urine from freshly voided midstream or bladder puncture was collected under aseptic condition for fungal culture,then the strains of epiphytes were identified by using API 20C AUX.The drug sensitivity was tested with ATB fungus3.Results 263 strains of epiphytes were isolated from the 2 983 urine samples,of which 92 were C.tropicalis,85 were C.glabrata,77 were Candida albican,and 9 were other fungus candida.The rates of drug resistance to fluconazole were 14.1 ％ (13 strains),37.6 ％ (32 strains) and 15.6％ (12 strains),and to itraconazole were 16.3％(15 strains),35.3％(30 strains) and 9.1％(7 strains),respectively.All of the 263 strains were not found to have drug resistance to amphotericin.Conclusions The isolation rate of urinary fungal infections is 8.8％ in Beijing Hospital.The majority of the tested fungal are C.glabrata,C.tropicalis and Candida albican,the former has higher resistance rate to azoles,and the two latter have better sensitivity to azole,and all of them have the sensitivity to amphotericin.