ABSTRACT
italic>Glycyrrhiza eurycarpa P.C.Li is a medicinal plant resource and is often mixed with traditional licorice herbs. We sequenced the chloroplast genome of Glycyrrhiza eurycarpa P.C.Li using Illumina high-throughput sequencing technology, and physical mapping and genomic characterization was carried out. Comparative genomic analysis was performed with Glycyrrhiza uralensis Fisch, Glycyrrhiza inflata Bat and Glycyrrhiza glabra L. The Glycyrrhiza eurycarpa P.C.Li chloroplast genome was 127 864 bp long with 34.25% GC content, consisting of a large single copy and a small single copy. The genome was missing the inverted repeat (IR) region. A total of 110 genes were annotated, including 76 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The 301 SSRs, rich in A-T repeats, were detected by MISA. The Glycyrrhiza eurycarpa P.C.Li chloroplast genome showed weak codon preference, and the codons were biased to use A and T bases. Three specific gene fragments of Glycyrrhiza eurycarpa P.C.Li were characterized by homology comparison. Based on Pi analysis, six new high mutation regions (psbZ-psbC, trnC-GCA-rpoB, trnR-UCU-trnG-UCC, ycf2, trnN-GUU-ycf1, ndhA) of medicinal licorice species were determined. The results of phylogenetic analysis indicate that Glycyrrhiza eurycarpa P.C.Li from Xinjiang is an interspecific hybrid taxon closely related to the three medicinal licorice species, and Glycyrrhiza inflata Bat, which is distributed in the same domain, is its male parent. Based on this study, the taxonomic identification, herb-specific DNA fingerprint development, genetic diversity, and molecular plant breeding of medicinal plants of the genus Glycyrrhiza can be established.
ABSTRACT
Rapid and accurate detection of contagium virus is a key tool for controlling the outbreak. As the number of patients infected with 2019 novel coronavirus (SARS-CoV-2) pneumonia is increasing and the epidemic is spreading, many hospitals, laboratories and pharmaceutical companies have developed diagnostic reagents that can detect SARS-CoV-2. Currently, genome sequencing or real-time PCR is a method for detecting SARS-CoV-2. However, there have been reported cases of negative results by nucleic acid detection but confirmed on the radiological CT scan. How to improve the diagnostic efficiency and the sensitivity of molecular detection remains to be solved. To analyze the variations in viral genomic sequence may be helpful in guiding the prevention and treatment of diseases infected by SARS-CoV-2. At present, controversy still exists over the source of SARS-CoV-2 even though the probable origin is bat in nature. This article summarizes the recent findings of SARS-CoV-2 from genetic, virological and evolutionary biological perspectives. By comparing the genomic variations among SARS-CoV-2 infected patients, we hope the findings can be used in the viral detection and potential antiviral therapy. Also, it will be great if we can trace the spread of the virus from one person to another, which will be an much effective way to predict and control the spread from the virus-carrier without symptoms at the incubation period to the others.
ABSTRACT
Purpose: The aim of this study was to isolate a novel mycobacteriophage and then explore its anti‑tuberculosis (TB) potential. Materials and Methods: Phage was isolated from enriched soil sample. A total of 36 mycobacterial strains obtained from clinical specimens were subjected to investigate the host range of phage by the spot lysis assay. Biological characteristics were investigated through growth curve, host range and phage antimicrobial activity in vitro. Then, genome sequencing and further analysis were accomplished by using an ABI3730XL DNA sequencer and comparative genome, respectively. Results: A lytic mycobacteriophage (Chy1) was isolated and the plaque morphology was similar to D29. The genome of Chy1 was estimated to be about 47,198 base pair (bp) and strong similarity (97.4% identity) to D29, especially, the Chy1 gene 7 encoding holin which is considered as a clock controlling growth cycle of the corresponding phage, was identical (100% identity) to phage D29 gene 11, thus classifying Chy1 as a member of the cluster A2 family. However, to our surprise, Chy1 can infect a narrower range of host‑mycobacterial strains than that of D29. The latent period of Chy1 was quite longer compared to D29. Moreover, Chy1 has a weaker ability to lyse Mycobacterium smegmatis compared to D29. Conclusions: The sequence of Chy1 showed 97.4% homology with the genome sequence of D29, but there was a large difference in their biological characteristics. Overall, the results of this investigation indicate that Chy1 is not an ideal candidate for developing mycobacteriophage‑based anti‑TB therapies but for future researches to investigate the reason why biological characteristics of Chy1 and D29 were remarkably different.