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1.
Tropical Biomedicine ; : 170-178, 2022.
Article in English | WPRIM | ID: wpr-936505

ABSTRACT

@#Cestode infections is widely reported in rodents, however species identification remains problematic due to the genetic or interspecies variation. Therefore, this study was aimed to verify the Cyclophyllidean parasites recovered from wild rats captured from different forest types using molecular based methods. Maximum-likelihood (ML) and neighbour-joining (NJ) trees were constructed inferred from 18 small subunit nuclear ribosomal RNA gene (18SrDNA) and mitochondrial cytochrome c oxidase subunit one gene (COX1) sequences of cestode worms recovered from 124 individuals from four rat species. Sequences obtained from both Hymenolepis diminuta and Hydatigera parva represents the first records in Malaysia. All the sequences were successfully amplified with product with total length of 205 and 1202 base pairs (bp), respectively. Three cestode species from the Family Hymenolepididae (Hymenolepis diminuta) and Family Taeniidae (Hydatigera parva; Hydatigera taeniaeformis) were successfully characterized using phylogenetic analyses and haplotype networking. Phylogenetic analysis showed that H. diminuta, Hydatigera parva (Hy. parva) and Hydatigera taeniaeformis (Hy. taeniaeformis) formed its own monophyletic clade in 18SrDNA analyses. Results also showed that Hy. taeniaeformis shared the same haplotype group with Hy. taeniaeformis from China (COX1) and linked with Hy. taeniaeformis from Japan (18SrDNA) while the Malaysian H. diminuta clearly formed a separate haplotype and networked with other regions. The Malaysian Hy. parva isolation, on the other hand, appeared to be genetically distinct from the European Hy. parva (Spain) strain, but closely linked to the local isolates. Molecular methods employed successfully improved in the detection of complex species in this group. The findings showed that molecular data can be useful to deeply study intra-specific variation in other cestode worms.

2.
J Environ Biol ; 2019 Jan; 40(1): 17-28
Article | IMSEAR | ID: sea-214571

ABSTRACT

Aim: The study was carried out to assess the overall genetic variability of 60 mango (Mangifera indica) genotypes for important fruit quality and yield characteristics to select better parents for mango breeding programme. Methodology: A total of 17 variables were scored and subjected to multivariate analysis. ANOVA, descriptive statistics, cluster analysis and principal component analysis were used to investigate variability among the genotypes for the selected traits. Results: Significant phenotypic variability was observed for studied traits. Cluster analysis classified all genotypes into two major groups according to shared similarity. Principal component analysis revealed that traits like fruit weight, fruit diameter, pulp content and pulp: stone ratio contributed positively, while fruit shape index, TSS:acid ratio, stone and peel traits contributed negatively for a large proportion of the observed variability. Interpretation: Pusa Arunima, Pusa Shresth, Pusa Lalima, Mallika, Ramkela, Amrapali, Extreema, Neelum, Gulab Jamun, S.B. Alibagh, Tommy Atkins, Primor-de-Amoreira genotypes were found unique for fruit and yield attributing traits, thus making them potential donor parent for fruit weight, fruit color, fruit diameter, fruit shape, pulp and pulp: stone traits in mango hybridization programme.

3.
Ciênc. rural (Online) ; 48(4): e20170444, 2018. tab, graf
Article in English | LILACS | ID: biblio-1045108

ABSTRACT

ABSTRACT: The objective of this research was to quantify the genetic divergence of potential Coffea canephora parents, with the goal of developing progenies that associate the best traits of the Conilon and Robusta botanical varieties for hybrid vigor expression. Thus, 10 morphological and productive characteristics of 130 clones of Conilon and Robusta botanical varieties and their intervarietal hybrids were evaluated over 2 years. The experiment was conducted in a randomized block design with four replicates of four plants per plot. For selection of parents, the main component analysis was used to associate values with reference points obtained from the average of each botanical variety. The first two principal components allowed for the separation of the botanical varieties representing the variability contained in the original data with 76% for the first year and 69% for the second year. Although, the genotype × years interaction had significant effects, there were minor differences in the grouping from one year to the next, which is associated with the higher repeatability estimates observed in this study. It was observed that crosses with the 16-1-81I, 9-1-82L, and 13-1-61I parents of the botanical variety Robusta and the 167I, 890E, and 130I parents of the Conilon botanical variety presented greater potential for obtaining selection gains.


RESUMO: O objetivo deste trabalho foi quantificar a divergência genética entre matrizes de C. canephora visando desenvolver progênies que associem características das variedades botânicas Conilon e Robusta à expressão do vigor do híbrido. Para isso, foram avaliadas dez características morfológicas e produtivas de 130 clones das variedades botânicas Conilon, Robusta e de híbridos intervarietais, ao longo de dois anos, em delineamento de blocos casualizados com quatro repetições de quatro plantas por parcela. Para seleção de genitores foi utilizada a técnica de componentes principais associada a pontos referenciais obtidos a partir da média de cada variedade botânica. Os dois primeiros componentes principais permitiram a separação das variedades botânicas e dos híbridos intervarietais com uma representação da variabilidade contida nos dados originais de 76% no primeiro ano e 69% no segundo ano. Apesar da significância da interação genótipos x anos, observou-se pouca diferença no agrupamento ao longo do tempo, o que está associado às maiores estimativas de repetibilidade observadas nesse estudo. Observou-se que as matrizes 16-1-81I, 9-1-82L e 13-1-61I da variedade botânica Robusta e as matrizes 167I, 890E e 130I da variedade botânica Conilon apresentaram maior potencial para a obtenção de ganhos com a seleção.

4.
Biosci. j. (Online) ; 32(4): 978-985, july/aug. 2016. tab
Article in English | LILACS | ID: biblio-965618

ABSTRACT

The objective was to evaluate the genetic variability among pepper accessions al the physical and chemical characteristics of fruit. Pepper accesses are from the Germplasm Bank at the Federal University of Uberlandia - Monte Carmelo Campus (Universidade Federal de Uberlândia-UFU, Campus Monte Carmelo, MG, Brazil). The experiment was conducted from November 2013 to March 2014 at UFU's Experimental Station on the Monte Carmelo campus, MG, Brazil. The statistical design consisted of randomized blocks with 47 treatments and four replications. Multivariate analyzes were performed for quantitative traits in 47 pepper access by principal component analysis. Means were compared by Scott-Knott test ( = 0.05). Mature fruits were collected 120 days after transplant and used to determine titratable acidity (TA), total soluble solids (SS), pH and SS/TA. There was genetic variability among accessions. The 47 accessions showed high soluble solids content of 9.08 ° Brix, acidity of 0.22, pH of 5.50 and an SS/TA ratio of 33.8. This last characteristic is of great importance in the food processing industry. UFU accession 28 has high levels of SS and TA and is therefore a candidate for Pepper breeding programs that target the needs of the food processing industry.


O objetivo do trabalho foi avaliar a variabilidade genética entre acessos de pimenta para características físico-químico de fruto. Os acessos de pimenta utilizados são provenientes do Banco de Germoplasma da Universidade Federal de Uberlândia. O experimento foi conduzido entre novembro de 2013 a março de 2014, na Estação Experimental de Hortaliças da UFU, campus Monte Carmelo. O delineamento estatístico utilizado foi em blocos casualizados com 47 tratamentos e quatro repetições. Foi realizada análise multivariada para caracteres quantitativos utilizando análise de componentes principais. As médias foram comparadas pelo teste Scott-Knott ( = 0,05). Frutos maduros foram colhidos 120 dias após o transplante e utilizados para determinar a acidez titulável (AT), sólidos solúveis totais (SST), pH e relação SS / AT. Houve variabilidade genética entre os acessos. Os 47 acessos apresentaram alto teor de sólidos solúveis de 9,08 ° Brix, acidez de 0,22, pH de 5,50 e uma relação SS / AT de 33,8. Esta última característica é de grande importância na indústria de processamento de alimentos. O acesso UFU 28 revelou níveis elevados de SS e AT se destacando entre os demais. Os acessos que destacaram são promissores para fomentar futuros programas de melhoramento genético de pimenta com boas características para indústria de processamento.


Subject(s)
Genetic Variation , Capsicum , Seed Bank , Fruit/genetics
5.
Article in English | IMSEAR | ID: sea-168228

ABSTRACT

Genetic divergence was assessed among 23 genotypes of basmati rice representing different regions of India on the basis of yield and quality characteristics utilizing Mahalanobis D2 analysis. Based on the genetic distance (D2 values), the rice genotypes were grouped into six clusters. Of the six clusters formed cluster VI consisted of maximum eight genotypes followed by cluster V accommodating six genotypes, cluster I with four genotypes, cluster III and IV with three genotypes each and cluster II with one genotype. The results indicated that there was some degree of similarity of genotypes clustered together on the basis of their origin. However, the pattern of distribution of some genotypes from different eco-geographical regions was found random, indicating that geographical diversity and genetic diversity were not related. The maximum intra cluster distance was observed for the cluster III. The highest genetic divergence was observed between the clusters IV and I exhibiting wide diversity. The genotypes representing cluster VI are more yielding combined with excellent cooking quality. Among different traits, plant height, kernel length, elongation ratio and amylose content had maximum contribution towards total divergence may be used as selection parameters in segregating generations. Intelligent selection of genotypes from the clusters may be used as potential donors for future hybridization programmes to develop varieties and hybrids of high yield without much compromise on quality.

6.
Article in English | IMSEAR | ID: sea-168105

ABSTRACT

A collection of 280 sesame genotypes of different ecogeographical origin was evaluated using augumented block design along with four checks. Analysis of variance revealed the presence of significant variability among genotypes for all the characters studied. The highest heritability coupled with highest genetic advance was observed for capsules per plant indicating the predominance of additive gene effects. Whereas lower estimates of heritability and genetic advance was revealed for days to maturity and capsule length suggesting the presence of nonadditive gene action for controlling these traits. Based on diversity the genotypes were grouped into 12 clusters and highest intercluster distance was observed between cluster VI & XII followed by cluster VI & IX, cluster II & VI and cluster III & IV. Among the traits studied capsule per plant and plant height contributed maximum for studying divergence while no contribution from capsule length. Hybridization involving genotypes of cluster VI with KMR 3 (cluster XII) may result in exploiting maximum heterosis to produce desirable transgressive segregants for crop improvement.

7.
Chinese Traditional and Herbal Drugs ; (24): 2974-2981, 2014.
Article in Chinese | WPRIM | ID: wpr-854907

ABSTRACT

Objective: In order to correctly identify the different germplasm resources of Gastrodia elata and gain the excellent germplasm resources, SRAP molecular marker was used to analyze the genetic diversity of G. elata. Methods: G. elata was collected from seven different areas, which included 24 smaples of G. elata f. elata, G. elata f. g1auca and G. elata f. viridis, the DNA figerprint of G. elata was constructed with SRAP molecular marker, and the genetic diversity was analyzed. Results: Six huandred Thirty-seven belts were amplified by 33 primers pairs, and the polymorphic percentage was 73.16%. The range of genetic similarity coefficient was 0.404 0-0.908 0, the genetic similarity coefficient among G. elata f. elata was in the range of 0.906 6-0.996 4, and those of G. elata f. g1auca, G. elata f. viridis, and hybrid was in the range of 0.410 4-0.999 6, 0.541 0-0.950 4 and 0.578 2, respectively. They showed small genetic differences. The analysis of molecular variance showed higher percentages of genetic variation within population than those among populations in all species. Populations showed higher genetic structure (FST = 0.33, P < 0.05). In addition, artificial cultivation had influence to the genetic differentiation, but not significantly. So in terms of different cultivation conditions so far had no significant impact on the genetic differentiation of G. elata. Mantel's test has been used to detect the correlation between genetic distance and geographic distance of all sorts of germplasm resources, the result had no significant correlation, and due to the limited number of samples, the result is not representative. Conclusion: SRAP molecular marker method can more effectively reflect the genetic polymorphisms of G. elata. Compared with other two phenotypes, G. elata f. elata is more conservative and has lower genetic diversity. The other two variants have higher genetic diversity.

8.
Chinese Journal of Schistosomiasis Control ; (6): 526-530, 2014.
Article in Chinese | WPRIM | ID: wpr-459673

ABSTRACT

Objective To investigate the existence of genetic divergence of sympatric populations of Anopheles sinensis of different feeding preferences based on the rDNA-ITS2 sequence differences. Methods A large number of wild anopheles popu-lations were trapped all night by man-baited net and calf-baited net that had been set up between high-density natural villages of An. sinensis populations and vector-breeding sites,from which two groups of An. sinensis were separated by morphological iden-tification and brought back to the lab for conventional breeding. A large closed greenhouse which temperature and humidity was appropriate was selected as research settings of mark-release-recapture methods by female mosquitoes ,in the center of which above An. sinensis populations baited by man and calf and respectively correspondingly marked by red and yellow phosphors were released in together,in each side of which An. sinensis were recaptured simultaneously by man-baited net and calf-baited net. An. sinensis populations trapped by man twice were brought back to the lab and bred with man-blood,correspondingly ones trapped by calf with calf-blood. Man-preferring and calf-preferring strains were screened respectively from An. sinensis which had been baited by man and calf by the mark-release-recapture methods after parent and F1 mosquitoes,and sequencing and aligning of both rDNA-ITS2 were conducted via PCR amplification. Results The recapture ratios of wild parental mosquitoes An. sinensis of man-preferring group by man-baited net and calf-baited net were 54.07%(339/627)and 45.93%(288/627)re-spectively,and ones of calf-preferring group by man-baited net and calf-baited net were 58.01%(409/705)and 41.99%(296/705)respectively. Two groups of parental mosquitoes trended towards selecting the original blood hosts in host-seeking prefer-ence(χ2=19.42,P<0.01). The recapture ratios of F1 mosquitoes An. sinensis of man-preferring group by man-baited net and calf-baited net were 63.43%(765/1 206)and 36.57%(441/1 206),and ones of calf-preferring group by man-baited net and calf-baited net were 68.22%(1 039/1 523)and 31.78%(484/1 523). Two groups of F1 mosquitoes had more significant characteris-tics of selecting the original blood hosts in host-seeking preference(χ2=271.69,P<0.01)and showed the genetic differentia-tion phenomenon,but the results of sequencing and aligning of the rDNA-ITS2 via PCR amplification showed no difference in base sequence between the two strains and both were 469 bp. Conclusions The genetic divergence based on the rDNA-ITS2 se-quence does not happen in An. sinensis sympatric populations of different feeding preferences.

9.
Article in English | IMSEAR | ID: sea-167510

ABSTRACT

Forty nine genotypes of pigeonpea representing the broad spectrum of variation were assessed for twelve characters using principal component analysis and cluster analysis. These genotypes were grouped into 8 clusters by using cluster analysis. Principal component analysis identified five principal components with eigen values more than one which contributed 80.10 per cent of the cumulative variance. The genotypes LRG-41 and SM- 97, MRG-1001, WRG 51-Y, RST-16 and ICP 7035 were selected from the above analysis appeared to be desirable for inclusion in crossing programme aimed for improvement of pigeonpea.

10.
Article in English | IMSEAR | ID: sea-167401

ABSTRACT

Genetic divergence using D2 statistic of forty genotypes of various agro-climatic region for ten quantitative characters revealed existence of considerable genetic diversity in the material. The genotypes were grouped into eleven clusters. Cluster VIII contained the highest number of nine genotypes followed by cluster V with seven genotypes. The pattern of distribution of genotypes from different geographical location into eleven clusters were random, demonstrating that geographical isolation may not be the only factor causing genetic diversity. The highest intra-cluster distance was observed for cluster VI (112.02) and the lowest was observed for cluster II (6.24). While the highest inter-cluster distance was observed between cluster III and X (493.41). Harvest index contributed maximum to diversity. Cluster IX with WGG-66 recorded the highest mean for yield contributing characters viz., plant height, branches/plant, pods/plant and clusters/plant. Therefore it was suggested that more emphasis should be given this genotype as parents for crossing with genotypes of other clusters which may produce novel recombinants with desirable traits.

11.
Mem. Inst. Oswaldo Cruz ; 108(supl.1): 110-122, 2013. tab, graf
Article in English | LILACS | ID: lil-697832

ABSTRACT

Sequences of the cytochrome c oxidase subunit I (COI) mitochondrial gene from adults of 22 Culex ( Culex ) species from Argentina and Brazil were employed to assess species identification and to test the usefulness of COI for barcoding using the best close match (BCM) algorithm. A pairwise Kimura two-parameter distance matrix including the mean intra and interspecific distances for 71 COI barcode sequences was constructed. Of the 12 COI lineages recovered in the Neighbour-joining topology, five confirmed recognised morphological species ( Cx. acharistus , Cx. chidesteri , Cx. dolosus , Cx. lygrus and Cx. saltanensis ) with intraspecific divergences lower than 1.75%. Cx. bilineatus is formally resurrected from the synonymy of Cx. dolosus . Cx. maxi , Cx. surinamensis and the Coronator group species included were clustered into an unresolved lineage. The intraspecific distance of Cx. pipiens (3%) was almost twice the interspecific between it and Cx. quinquefasciatus (1.6%). Regarding the BCM criteria, the COI barcode successfully identified 69% of all species. The rest of the sequences, approximately 10%, 18% and 3%, remained as ambiguously, mis and unidentified, respectively. The COI barcode does not contain enough information to distinguish Culex ( Cux. ) species.


Subject(s)
Animals , Animal Identification Systems , Classification/methods , Culex/anatomy & histology , Culex/genetics , DNA Barcoding, Taxonomic , Electron Transport Complex IV/genetics , Algorithms , Argentina , Brazil , Cluster Analysis , Culex/classification , Polymerase Chain Reaction
12.
Ciênc. rural ; 42(11): 1954-1959, nov. 2012. ilus, tab
Article in Portuguese | LILACS | ID: lil-654319

ABSTRACT

Objetivou-se com este estudo avaliar, por meio de caracteres quantitativos, a dissimilaridade genética entre cultivares de girassol em diferentes localidades, além da concordância entre os métodos, visando à extração de linhagens para possíveis cruzamentos. Foram cultivados oito híbridos de girassol em duas localidades no noroeste do Rio Grande do Sul, com solo predominantemente do tipo Latossolo Vermelho distrófico. Foram utilizados métodos multivariados para determinar a divergência genética, utilizando a distância generalizada de Mahalanobis. Apesar dos rendimentos distintos entre locais e cultivares, os métodos de agrupamento tiveram concordância entre si. Para obtenção de populações segregantes, a cultivar 'Olisun 5', independente da localidade, demonstrou-se com maior potencial de hibridação, tendo as maiores contribuições por meio do número de aquênios por capítulo e altura de inserção do capítulo.


The aim of this study to evaluate by means of quantitative traits, the genetic dissimilarity among sunflower cultivars in different locations, in addition to the agreement between the methods in order to extract lines for future crosses. There were eight sunflower hybrids grown in two locations in northwestern Rio Grande do Sul, mainly with soil type Oxisol. Multivariate methods were used to determine the genetic diversity, using the Mahalanobis distance. Although the different yield between locations and cultivars, methods of grouping agreed among them selves. To obtain segregating populations, regardless of location, the cultivate 'Olisun 5', demonstrated greater potential for hybridization, with major contributions through number of achenes per chapter and height of the insertion section.

13.
Article in English | IMSEAR | ID: sea-163711

ABSTRACT

Fifty genotypes of groundnut were classified into five and seven clusters in D2 and Metroglyph methods of analyses respectively. Harvest Index and 100-seed weight were the main contributors to total divergence as per metroglyph analysis. The characters on X and Y axes in scattered metroglyph diagram determine the grouping of genotypes, hence it poses a problem for judicious selection of these characters. The comparative study of these methods indicated that metroglyph analysis would be suitable for preliminary grouping when large number of genotypes are considered at a time. The differences between the two methods, the number of clusters formed, inter cluster distance, characters considered for grouping and superimposition of genotypes within the cluster indicated that D2 analysis was more effective compared to metroglyph analysis.

14.
Rev. bras. plantas med ; 13(1): 24-29, 2011. tab
Article in Portuguese | LILACS | ID: lil-582758

ABSTRACT

Este trabalho objetivou avaliar a divergência genética entre nove acessos de mentrasto (Ageratum conyzoides) por métodos multivariados utilizando caracteres morfológicos, em quatro épocas de colheita. Os nove acessos de mentrasto foram obtidos de plantas que ocorrem naturalmente nas cinco regiões climáticas do Estado do Tocantins. Em cada época de colheita foram avaliadas as características como biomassa fresca da parte aérea, biomassa seca, área foliar, número de folhas, floração e altura. Pela análise de agrupamento (método de Tocher) foram formados dois grupos na primeira e quarta épocas de colheita, três grupos na segunda época e quatro grupos na terceira época de colheita. Observou-se variação na constituição dos grupos pelos acessos nas épocas de colheita. A divergência genética entre acessos de mentrasto, avaliada por caracteres morfológicos, foi influenciada pelo estádio de desenvolvimento da espécie. A existência de variabilidade entre os acessos coletados em diferentes localidades fornece subsídio para a coleta sistematizada de germoplasma em A. conyzoides no Estado do Tocantins.


This study aimed to analyze the genetic divergence among nine mentrasto (Ageratum conyzoides) accessions by multivariate methods using morphologic traits for four harvesting periods. The nine accessions of mentrasto were obtained from plants that occur naturally in five climatic regions of the state of Tocantins. At each harvesting period, the following traits were evaluated: fresh biomass of the aerial part, dry biomass, leaf area, number of leaves, flowering and height. The grouping analysis (Tocher's method) identified two groups, in the first and fourth harvest periods, three groups in the second harvest period and four groups in the third harvest period. Variation was observed for the group constitutions among the different harvesting periods. The genetic divergence among mentrasto accessions, evaluated by morphologic traits, was influenced by developmental stage of specie. The existence of genetic variability among accessions from different regions supports the systematic collection of A. conyzoides germplasm in the state of Tocantins.


Subject(s)
Ageratum/anatomy & histology , Ageratum/growth & development , Ageratum/physiology , Ageratum/genetics , Brazil , Multivariate Analysis , Natural Resources Management
15.
Ciênc. agrotec., (Impr.) ; 34(6): 1390-1395, nov.-dez. 2010. tab
Article in Portuguese | LILACS | ID: lil-572308

ABSTRACT

Um dos grandes desafios atuais da pesquisa agrícola é a produção de cultivares melhoradas de mamoneira, com estabilidade genética, alta qualidade e potencial produtivo. Objetivou-se, no presente trabalho, estimar as correlações genotípica, fenotípica e de ambiente entre caracteres de mamona para facilitar a caracterização dos acessos. Foram avaliados em Lavras, MG, no delineamento de blocos casualizados com três repetições, quinze acessos de mamona. Os caracteres avaliados foram altura da planta, altura do caule, número de internódios, diâmetro do caule, número de cachos, estande final e peso de 100 sementes. Observou-se que houve correlação fenotípica positiva do número de internódios e altura do caule, altura do caule e altura da planta, altura da planta e diâmetro do caule e por fim entre diâmetro do caule e peso de 100 sementes. Houve também correlação ambiental positiva entre as correlações altura de caule e altura de planta, altura de planta e diâmetro do caule, altura da planta e estande final e diâmetro do caule e número de cachos, concluindo que as correlações estimadas possibilitaram conhecer as associações entre os caracteres, fornecendo importantes informações para o estabelecimento de um plano de melhoramento genético da mamona, a partir dos acessos avaliados.


One of the great current challenges of agricultural research is the production of improved castor bean cultivars, with genetic stability, high quality and high yielding potential. The objective this work was to estimate genotypic, phenotypic and environmental correlations among traits of the castor bean plant to make the characterization of the accessions easy. They were evaluated in Lavras, MG, Brazil, in a randomized block design with three replicates, fifteen castor bean accessions. The traits evaluated were: plant height, stem height, number of nodes, stem diameter, final number of clusters, stand and 100-seed weight. It was observed that there was a positive phenotypic correlation of the node number and stem height, stem height and plant height, plant height and stem diameter and at last between stem diameter and 100-seed weight. There was also a positive environmental correlation among the correlations stem height and plant height, plant height and stem diameter, plant height and final stand and stem diameter and number of clusters, concluding that the estimated correlations make it possible to know the associations among the traits, giving important information to the establishment of a genetic improvement plan of castor bean from the accessions evaluated.

16.
Genet. mol. res. (Online) ; 7(2): 534-541, 2008. tab, ilus
Article in English | LILACS | ID: lil-640984

ABSTRACT

The garlic cultivars grown in Brazil evolved from somatic mutations and clone selection by breeding programs and by the introduction of germplasm from other countries. Morphological characters have been used to differentiate these cultivars. Two hundred and six random amplified polymorphic DNA markers were utilized for a diversity analysis of the 17 most planted garlic cultivars in Brazil. Bootstrap analysis showed that the number of markers was efficient and sufficient to obtain a coefficient of variation of 10%. Similarity varied between 16 and 98% and cluster analysis showed that, in general, genetic similarities correlate with morphological characters of the cultivars and production cycle variation. High bootstrap values at most of the nodes supported the dendrogram stability. The grouping of most varieties agreed well with previous reports based on morphological characters. As a vegetative-propagated species, viral diseases are a key problem regarding production and quality of the bulbs, causing gradual loss of yield and decrease in storage capacity. To improve the health quality of garlic seed, a virus-free stock of garlic cloves of the Amarante cultivar was obtained. The ability to distinguish garlic cultivars to detect varietal mixing after in vitro multiplication is extremely important, since correct identification is not possible until bulbs are produced. Random amplified polymorphic DNA markers were also used to differentiate cultivars while they are in vitro and not amenable to morphological discrimination. No difference was identified between the fingerprints of the virus-free or of the infected bulks of Amarante, showing that there was no clove mixing in the handling of material in the clonal multiplication phase.


Subject(s)
Garlic/cytology , Garlic/genetics , Genetic Variation , Crop Production , Garlic/classification , Brazil , Efficiency , Genes, Plant , Genetic Markers/physiology , Photoperiod , Phylogeny , Quality Control , Random Amplified Polymorphic DNA Technique
17.
Genet. mol. biol ; 30(3): 667-675, 2007. graf, tab
Article in English | LILACS | ID: lil-460088

ABSTRACT

Allozyme, microsatellite and random amplified polymorphic DNA (RAPD) molecular markers were used to investigate the within and between population genetic variability and between population genetic differentiation of the Brazilian stingless bee uruçu amarela (nominally Melipona rufiventris Lepeletier, 1836) present in savanna and Atlantic forest habitats of the Brazilian state of Minas Gerais (MG). We found low levels of within population variability, although there were a large number of private alleles that specifically characterized these populations. The F ST values indicated a high level of genetic diversity between populations. Analysis of molecular variance (AMOVA) showed a high degree of population differentiation between the savanna and Atlantic forest habitats, confirmed by population pairwise F ST data. Principal coordinates analysis and unweighted pair-group method using an arithmetic average (UPGMA) dendrograms also confirmed that in Minas Gerais the savanna populations (M. rufiventris) were genetically distinct from those present in the Atlantic forest (M. mondury). In addition, populations from locations near the towns of Dom Bosco and Brasilândia de Minas were genetically different from those collected in other localities in the savanna. Our data indicate that populations of uruçu amarela found in the savanna and Atlantic forest habitats of Minas Gerais state should be treated separately for conservation purposes and that special attention should be given to the populations found in the region of Dom Bosco and Brasilândia de Minas until their taxonomic status is clarified.

18.
Acta amaz ; 25(3)1995.
Article in Portuguese | LILACS-Express | LILACS, VETINDEX | ID: biblio-1454570

ABSTRACT

The amplitude of the genetic divergence among 29 populations of cubiu from the germplasm collection maintaned by the Amazonian National Research Institute (INPA) was evaluated. The trial was carried out in the Vitória de Santo Antão Experiment Station of the Pernambuco State Research Enterprise (IPA), Pernambuco, Brazil. The experimental design was a randomized complete block, with four replications. The following characters of agronomic importance were evaluated; fruit width (cm); fruit length (cm); stem diameter at soil level (cm); leaf area (cm2); plant height (cm); total fruit number/plant; average fruit weight/ plant (g); estimated fruit yield (Mt/ha); loculi number; pulp thickness (mm) and total soluble solids (%). Cluster analysis (Tocher Optimization Method, using the Mahalanobis Generalized Distance) grouped the 29 cubiu accessions into 9 groups. The accessions from Umariaçú (AM) and São Paulo de Olivença (AM) were most closely related, and are also geographically close, and those from Borba (AM) and São Gabriel da Cachoeira (AM) were most divergent, both genetically and geographically. The accessions from Atalaia do Norte (AM), Borba (AM), Iquitos (Peru), São Gabriel da Cachoeira (AM) and Belém (PA) presented good agronomic traits and were divergent among themselves. Their use as potential progenitors in the cubiu breeding program may provide both good quality and heterosis.


A amplitude da variabilidade genética em 29 populações de cubiu do Programa de Melhoramento Genético de Hortaliças do Instituto Nacional de Pesquisas da Amazônia-INPA, foi avaliada num experimento conduzido na Estação Experimental da Empresa Pernambucana de Pesquisa Agropecuária-IPA, em Vitória de Santo Antão, Estado de Pernambuco. Adotou-se o delineamento experimental em blocos casualizados com 4 repetições. Coletaram-se dados referentes a: largura do fruto (cm); comprimento do fruto (cm); diâmetro do colo (cm); área da folha (cm2); altura da planta (cm); número total de frutos/planta; peso médio de frutos/planta (g); produção estimada de frutos (ton/ha); número de lóculos; espessura da polpa (mm) e de sólidos solúveis totais (%). A análise de agrupamento, pelo Método de Otimização de Tocher, usando a Distância Generalizada de Mahalanobis, agrupou as 29 populações de cubiu em 9 diferentes grupos. Entre os pares de menor e maior divergências genéticas, foram identificadas as populações procedentes de Umariaçu (AM) e de São Paulo de Olivença (AM) e as de Borba (AM) e de São Gabriel da Cachoeira (AM), respectivamente. As populações originárias de Ataláia do Norte (AM), Borba (AM), Iquitos (Peru), São Gabriel da Cachoeira (AM) e de Belém (PA) apresentaram as maiores distâncias genéticas entre os grupos formados. Portanto, podem ser indicadas como progenitores potenciais em programa de melhoramento genético do cubiu.

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