Salinity tolerance in barley during germination—homologs and potential genes / 浙江大学学报（英文版）（B辑：生物医学和生物技术）

Salinity affects more than 6% of the world’s total land area, causing massive losses in crop yield. Salinity inhibits plant growth and development through osmotic and ionic stresses; however, some plants exhibit adaptations through osmotic regulation, exclusion, and translocation of accumulated Na+ or Cl-. Currently, there are no practical, economically viable methods for managing salinity, so the best practice is to grow crops with improved tolerance. Germination is the stage in a plant’s life cycle most adversely affected by salinity. Barley, the fourth most important cereal crop in the world, has outstanding salinity tolerance, relative to other cereal crops. Here, we review the genetics of salinity tolerance in barley during germination by summarizing reported quantitative trait loci (QTLs) and functional genes. The homologs of candidate genes for salinity tolerance in Arabidopsis, soybean, maize, wheat, and rice have been blasted and mapped on the barley reference genome. The genetic diversity of three reported functional gene families for salt tolerance during barley germination, namely dehydration-responsive element-binding (DREB) protein, somatic embryogenesis receptor-like kinase and aquaporin genes, is discussed. While all three gene families show great diversity in most plant species, the DREB gene family is more diverse in barley than in wheat and rice. Further to this review, a convenient method for screening for salinity tolerance at germination is needed, and the mechanisms of action of the genes involved in salt tolerance need to be identified, validated, and transferred to commercial cultivars for field production in saline soil.

Transcriptome profiling and digital gene expression analysis of genes associated with salinity resistance in peanut

Background: Soil salinity can significantly reduce crop production, but the molecular mechanism of salinity tolerance in peanut is poorly understood. A mutant (S1) with higher salinity resistance than its mutagenic parent HY22 (S3) was obtained. Transcriptome sequencing and digital gene expression (DGE) analysis were performed with leaves of S1 and S3 before and after plants were irrigated with 250 mM NaCl. Results: A total of 107,725 comprehensive transcripts were assembled into 67,738 unigenes using TIGR Gene Indices clustering tools (TGICL). All unigenes were searched against the euKaryotic Ortholog Groups (KOG), gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases, and these unigenes were assigned to 26 functional KOG categories, 56 GO terms, 32 KEGG groups, respectively. In total 112 differentially expressed genes (DEGs) between S1 and S3 after salinity stress were screened, among them, 86 were responsive to salinity stress in S1 and/or S3. These 86 DEGs included genes that encoded the following kinds of proteins that are known to be involved in resistance to salinity stress: late embryogenesis abundant proteins (LEAs), major intrinsic proteins (MIPs) or aquaporins, metallothioneins (MTs), lipid transfer protein (LTP), calcineurin B-like protein-interacting protein kinases (CIPKs), 9-cis-epoxycarotenoid dioxygenase (NCED) and oleosins, etc. Of these 86 DEGs, 18 could not be matched with known proteins. Conclusion: The results from this study will be useful for further research on the mechanism of salinity resistance and will provide a useful gene resource for the variety breeding of salinity resistance in peanut.

Formation of seedlings of species from the genus passiflora under saline stress / Formação de mudas de espécies do gênero passiflora sob estresse salino

The genus Passiflora of the passion fruit crop is the most important from economic point of view. However, its cultivation in the semi-arid region is at risk due to salinity problems, requiring the identification of tolerant species, which develop better in environments with salinity problems. The objective of this study was to evaluate the effects of water salinity on growth and formation of seedlings of three species from the genus Passiflora. The treatments were distributed in a completely randomized design, adopting a 5 x 3 factorial arrangement, with five levels of irrigation water salinity (ECw) of 0.3; 1.4; 2.5; 3.6 and 4.7 dS m-1 and three species of Passiflora: gibertii; cincinnata and edulis 'BRS Gigante Amarelo', with four replicates. P. edulis surpassed the others in leaf area, shoot, root and total dry matter and Dickson index of seedling quality. Irrigation water salinity inhibits the formation of seedlings evaluated by growth in height, stem diameter and shoot, root and total dry matter of the studied species of Passiflora. The interaction between ECw and the Passiflora species interfered significantly in height, root, shoot and total dry matter and Dickson quality index. ECw above 0.3 dS m-1 affects the Dickson quality index of P. gibertii more,compared with P. edulis and P. cincinnata.

O gênero Passiflora da cultura do maracujazeiro é o importante de ponto de vista econômico. No entanto, seu cultivo na região semiárida apresenta risco, devido aos problemas de salinidade, sendo necessária a identificação de espécies tolerantes, que se desenvolvam em ambientes com problemas de salinidade. Com isso, objetivouse avaliar os efeitos da salinidade das águas no crescimento e formação de mudas de três espécies do gênero Passiflora. Os tratamentos foram distribuídos em delineamento inteiramente casualizado, usando arranjo fatorial 5 x 3, com cinco níveis de salinidade da água de irrigação (CEa) de 0,3; 1,4; 2,5; 3,6 e 4,7 dS m-1 e três espécies de Passiflora: gibertii; cincinnata e edulis BRS Gigante Amarelo, com quatro repetições. Dentre as espécies, P. edulis superou as demais em área foliar, matéria seca da parte aérea, de raiz e total e índice de qualidade de mudas de Dickson. A salinidade da água de irrigação inibe a formação de mudas avaliadas pelo crescimento em altura, diâmetro do caule, massa seca das partes aérea, raiz e total, das espécies estudadas. A interação entre CEa e as espécies de Passiflora interfere significativamente na altura, massa seca das aízes, parte aérea, total e índice de qualidade de Dickson das mudas. A irrigação com CEa acima de 0,3 dS m-1 compromete mais o índice de qualidade de Dickson da espécie P. gibertii que das espécies P. edulis e P. cincinnata.

Cambios anatómicos en raíces e hipocótilos de plántulas de Prosopis ruscifolia (Fabaceae) sometidas a estrés salino / Anatomical changes in roots and hypocotyls of Prosopis ruscifolia (Fabaceae) seedlings exposed to saline stress

ResumenProsopis ruscifolia es una especie arbórea pionera en áreas inundadas o salinas. El objetivo de este trabajo fue determinar cambios anatómicos en raíces e hipocótilos de plántulas de P. ruscifolia sometidas a estrés salino, bajo condiciones controladas. Las semillas se recolectaron en bosques nativos de la Región Chaqueña Occidental de Argentina. Las semillas se sembraron sobre toallas de papel humedecidas con soluciones salinas de 100, 200 y 300 mM de NaCl y un control humedecido con agua destilada. Se sembraron cuatro repeticiones de 50 semillas cada una, correspondientes a cada tratamiento, se ubicaron en cajas plásticas herméticas dentro de cámara de siembra a 27 ºC y con fotoperíodo de 12 horas. Doce días después de la siembra, se extrajeron plántulas para estudios anatómicos. Se estudiaron 35 plántulas correspondientes a cada tratamiento. Se midieron en raíces e hipocótilos las siguientes variables anatómicas: diámetro de la raíz principal e hipocótilo (µm), espesor de la corteza (µm), número de estratos celulares en la corteza, diámetro del cilindro central (µm), diámetro de la médula (µm), número de estratos celulares en el periciclo y diámetro tangencial de los vasos (µm). Se realizó ANOVA con diámetro de la raíz o hipocótilo como variable dependiente y espesor de la corteza, número de estratos celulares en la corteza, diámetro del cilindro central, diámetro de la médula, número de estratos celulares en el periciclo, diámetro tangencial de los vasos y concentración salina como variables independientes. El diámetro de la raíz disminuyó significativamente con el aumento de la concentración salina (P < 0.0001). El espesor de la corteza redujo su espesor a 100 mM (P < 0.0001) e incrementó el número de estratos celulares que la componen (P < 0.0002). El diámetro del cilindro central se redujo a la concentración salina de 100 mM (P < 0.0001) y el diámetro de la médula y el número de estratos celulares del periciclo (P < 0.0003) disminuyó progresivamente hasta 300 mM. El diámetro tangencial de los vasos (P < 0.0001) se redujo recién a 300 mM de NaCl. Estos cambios anatómicos podrían estar relacionados con la alteración de la expansión y división celular causada por la salinidad y comprometer la formación de raíces laterales y el almacenamiento de reservas. Los hipocótilos no mostraron cambios anatómicos significativos en respuesta al incremento en la salinidad, con excepción de la variación en la posición de estomas y un incremento en el espesor de la hipodermis. Estos cambios parecen indicar el estrés hídrico impuesto por el bajo potencial osmótico causado por las sales. Las plántulas de P. ruscifolia experimentaron cambios anatómicos en respuesta a las concentraciones salinas analizadas, en rasgos vinculados al almacenamiento de reservas, a la absorción y la conducción de agua y la formación de raíces laterales.

Abstract:Prosopis ruscifolia is a pioneer tree species in flooding or saline areas. The aim of this work was to assess anatomical changes in roots and hypocotyls of P. ruscifolia seedlings induced to saline stress under controlled conditions. Seeds, collected in natural forests of Western Chaco region in Argentina, were sown on paper towels moisturized with saline solutions of 100, 200 and 300 mM of NaCl, and a control group with distilled water. Four repetitions of 50 seeds per treatment were sown, located in hermetic polystyrene boxes, and included in a seeding chamber, at 27 ºC and 12 hours photoperiod. Were studied 35 seedlings from each saline concentration; these seedlings were processed 12 days after sown to obtain microscopic samples. The anatomical variables measured in roots and hypocotyls were the following: main root diameter (µm), bark thickness (µm), number of cell strata in bark, central cylinder diameter (µm), pith diameter (µm), number of cell strata in the pericycle and the tangential diameter of vessels (µm). ANOVA analysis were performed with hypocotyl and root diameters as the dependent variable, and bark thickness (µm), number of cell strata in the bark, the central cylinder diameter (µm), the pith diameter (µm), number of cell strata in the pericycle, the tangential diameter of vessels and the saline concentration as independent variables. Results showed that the root diameter decreased with increasing saline concentrations (P < 0.0001). The bark thickness decreased at 100 mM (P < 0.0001) and the number of cell strata of bark increased to 300 mM (P < 0.0002). The central cylinder diameter decreased at 100 mM saline concentration (P < 0.0001) and the number of cell strata of the pericycle and the pith diameter reduced progressively until 300 mM. The tangential diameter of vessels decreased at 300 mM. These anatomical changes suggested alterations in the expansion and cell division caused by the salinity, and could limit lateral roots formation and reserves storage. Hypocotyls did not show significant anatomical changes in response to increasing salinity, with exception of stomata position and an increase of the hypodermis thickness. These changes indicated that the water stress imposed by low osmotic potential is caused by increasing saline concentration. The seedlings of P. ruscifolia experienced anatomical changes in response to tested saline concentrations in traits related to reserve storage, the absorption and conduction of water, and lateral roots formation. Rev. Biol. Trop. 64 (3): 1007-1017. Epub 2016 September 01.

Detection of genes providing salinity-tolerance in rice / Detecção de genes que conferem tolerância à salinidade em planta de arroz

The present study aimed to identify salinity-tolerant genes in three cultivars (BRS-7 Taim, BRS Querência and BRS Atalanta) of Oryza sativa L. ssp. indica S. Kato and in three cultivars (BRS Bojurú, IAS 12-9 Formosa and Goyakuman) of Oryza sativa L. ssp. japonica S. Kato. Ten days after emergence seedlings were transferred to a greenhouse and placed in a 15L vessel with half strength Hoagland nutrient solution, which was changed every four days, under controlled temperature and humidity. Plants were harvested 56 days after transfer. DNA extraction was carried out by CTAB method and salinity-tolerant genes SOS and CK1 were identified by in silico research. Amplification of gene sequence was performed with in silico primers. Bands were detected by agar gel electrophoresis and visualized under ultraviolet light after staining with ethidium bromide. Gene SOS1 fragments were present in all cultivars, except in BRS Atalanta, whereas CK1 gene was present in all evaluated cultivars. Results show that salinity-tolerant genes under analysis were identified in the two sub-species.

O estudo teve como objetivo identificar genes envolvidos na tolerância à salinidade em três cultivares (BRS-7 Taim, BRS Querência e BRS Atalanta) de Oryza sativa L. ssp. indica S. Kato e em três cultivares (BRS Bojurú, IAS 12-9 Formosa e Goyakuman) de Oryza sativa L. ssp. japonica S. Kato. As plântulas foram transferidas para casa de vegetação, sob temperatura e umidade relativa controladas, dez dias após a emergência e colocadas em bacia com capacidade para 15 litros, contendo solução nutritiva de Hoagland, meia força, a qual foi mudada em intervalos de quatro dias. A coleta foi aos 56 dias após a transferência. A extração de DNA foi realizada pelo método CTAB. Os genes SOS e CK1, envolvidos na tolerância à salinidade, foram identificados por meio de pesquisa in sílico . A amplificação das sequências do gene foi realizada utilizando-se primers também desenhados in sílico. As bandas foram detectadas por eletroforese em gel de agarose e visualizadas em luz ultravioleta após coloração com brometo de etídio. Fragmentos do gene SOS1 foram encontrados em todas as cultivares, exceto para BRS Atalanta. O gene CK1 esteve presente em todas as cultivares avaliadas. Os resultados mostram que os genes estudados estão presentes em ambas as subespécies.

Osmoregulation of juvenile marine goliath grouper (Epinephelus itajara) in low-salinity water / Osmorregulación de juveniles del mero guasa juvenil (Epinephelus itajara) en aguas de baja salinidad / Osmorregulação de juvenis do peixe garupa (Epinephelus itajara) em águas de baixa salinidade

Background: goliath grouper (Epinephelus itajara) is an economically valuable marine species and an excellent candidate for domestication for aquaculture purposes. If this grouper can osmoregulate in lowsalinity water, its cultivation can provide socio-economic benefits, for both coastal communities and the mainland agricultural sector. Objective: to evaluate the osmoregulatory capacity of juvenile goliath grouper when exposed to low-salinity water. Methods: juvenile goliath grouper (Epinephelus itajara) were either directly or gradually transferred from seawater to freshwater to test osmoregulatory ability. Body weight was assessed during acclimation and blood samples were taken to measure total osmolality and electrolytes. Results: all fish survived the transfer to freshwater and were maintained for up to 12 days after termination of the acclimation trials which lasted 72 hours. Juvenile goliath grouper were hyposmotic (342-462 mosmol/kg) to seawater and hyperosmotic (272-292 mosmol/kg) to freshwater. The gills and kidneys were found to have principal roles in the osmoregulatory processes. Numerous chloride cells were found on superficial regions of the gill filament epithelium, most likely serving to eliminate the excess of electrolytes while in seawater. The kidneys had numerous nephrons to make urine and retain electrolytes while in freshwater. Conclusions: these observations lead to the conclusions that juvenile goliath grouper have the ability to osmoregulate in freshwater and should be considered a marine euryhaline species. Such adaptability opens for consideration the possibility that goliath grouper could be successfully farmed in brackish water or even in freshwater.

Antecedentes: el mero guasa Epinephelus itajara es una especie marina de gran valor comercial y un excelente candidato a domesticar con fines acuícolas. Si el mero guasa puede osmoregular en agua de baja salinidad, su cultivo puede proporcionar beneficios socio económicos, tanto para las comunidades costeras, como al sector agropecuario en tierra firme. Objetivo: evaluar el efecto en la osmoregulación de juveniles de mero guasa expuestos a aguas de baja salinidad. Métodos: juveniles de mero guasa mantenidos en agua de mar fueron transferidos directamente o de manera gradual a agua dulce para poner a prueba su capacidad osmorreguladora. Durante el proceso de aclimatación se les evaluó el peso corporal y se extrajo sangre para medir la osmolalidad total y electrolitos. Resultados: todos los peces sobrevivieron la transferencia al agua dulce y durante 12 días más, después de la finalización de los ensayos de aclimatación que tuvieron una duración de 72 horas. Juveniles de mero guasa fueron hiposmóticos (342-462 mosmol/kg) respecto al agua de mar e hiperosmóticos (272-292 mosmol/kg) respecto al agua dulce. La histología de branquias y riñones reveló que estos órganos son de gran importancia en los procesos osmorregulatorios. Un gran número de células de cloruro fueron localizadas como parte del epitelio de los filamentos branquiales; estas células trabajan para librar al cuerpo del exceso de electrolitos mientras los peces se encuentran en el mar. En el riñón se observaron numerosas nefronas y túbulos colectores para la formación de orina y retención de electrolitos; tejidos esenciales si estos peces permanecen en agua dulce. Conclusión: estas observaciones llevan a la conclusión de que los juveniles de mero guasa tienen la capacidad de osmorregular en agua dulce y debe ser considerada una especie marina eurihalina. Tal adaptabilidad supone la posibilidad de que el mero guasa podría ser cultivado en agua salobre o incluso en agua dulce.

Antecedentes: o peixe garoupa Epinephelus itajara é uma espécie marinha de muito valor comercial a qual seria ótimo ter domesticada para sua produção industrial na aquicultura. Se o peixe garoupa pode osmoregular em água de baixa salinidade, sua cultura pode proporcionar benefícios socioeconômicos, tanto para as comunidades costeiras, quanto para o sector agrícola no interior do continente. Objetivo: avaliar a osmoregulação de juvenis do peixe garoupa expostos a águas de baixa salinidade. Métodos: juvenis do peixe Garoupa mantidos no mar foram transferidos direta ou gradualmente para água doce testando assim sua capacidade osmorregulatória. Durante o processo de aclimatização, foi avaliado o peso corporal e amostras de sangue foram coletadas para medir a osmolalidade total e alguns eletrólitos. Resultados: todos os peixes sobreviveram à transferência para água doce 12 dias mais após a conclusão dos estudos de aclimatação que se fizeram durante um período de 72 horas. Juvenis do peixe garupa foram hiposmoticos (342-462 mosmol/kg) com respeito à água marinha e hiperosmóticos (272-292 mosmol/kg) com respeito à água doce. Histologia das brânquias e os rins revelaram que estes órgãos são de grande importância nos processos de osmoregulaçao. Um grande número de células de cloreto foi localizado como parte do epitélio dos filamentos branquiais; estas células trabalham no organismo para livrar o corpo do excesso de eletrólitos enquanto os peixes estão no mar. Nos rins foram observados numerosos néfrons e ductos recoletores para a formação de urina e retenção de eletrólitos; tecidos essenciais no caso de que estes peixes permaneçam em água doce. Conclusão: estas observações levam à conclusão de que os juvenis do peixe garupa tem a capacidade de osmoregular em água doce e deve ser considerado uma espécie marinha eurialina. A adaptabilidade deste peixe em água doce supõe a possibilidade de que o peixe garupa poderia ser cultivado nesta água em criadouros no interior do continente.

Genetic diversity analysis of rice cultivars (Oryza sativa L. ) differing in salinity tolerance based on RAPD and SSR markers

Thirty rice cultivars were evaluated for salinity tolerance during the seedling stage and were divided into five tolerance groups including tolerant (T), moderately tolerant (MT), moderately susceptible (MS), susceptible (S) and highly susceptible (HS) which comprised 5, 10, 9, 4 and 2 cultivars respectively. Genetic diversity of all rice cultivars was evaluated using random amplified polymorphic DNA (RAPD) and simple sequence repeats (SSR) markers. The cultivars were evaluated for polymorphisms after amplification with 20 random decamer primers and 20 SSR primer pairs. A total of 161 RAPD markers and 190 SSR alleles were produced which revealed 68.94 percent and 89.47 percent polymorphism respectively. Mean genetic similarity coefficient was 0.82 for RAPD and 0.70 for SSR. Cluster analysis based on RAPD markers was effective in grouping cultivars based on their salt tolerance ability. Group IA1, IB and IV contained three T, three S and two HS rice cultivars respectively. The MT and MS cultivars which showed similar physiological responses to salinity were resolved into two groups: Group IA2 and Group II comprising ten and eight MT/MS cultivars respectively. Cluster analysis based on SSR markers separated rice cultivars into groups based on genetic relatedness which did not correspond to salinity tolerance level. The results from this study provided some useful implications for salt tolerance breeding programs. The evaluation of genetic similarity and cluster analysis together with salt tolerance ability provides some useful guides for assisting plant breeders in selecting suitable genetically diverse parents for the crossing program.

Relative salinity tolerance of warm season turfgrass species.

Fresh water, coupled with soil salinization in many areas has resulted in an increased need for screening of salt tolerant turf grasses. Relative salinity tolerance of eight warm season turfgrass species were examined in this study in sand culture. Grasses were grown in a glasshouse, irrigated with either distilled water or saline sea water adjusted to 24, 48 or 72 dSm-1. Salt tolerances of the grasses were assessed on the basis of their shoot and root growth, leaf firing and turf quality. Regression analysis indicated that Zoysia japonica (Japanese lawn grass) (JG), Stenotaphrum secundatum (St. Augustine) (SA), Cynodon dactylon ( satiri) (BS), Zoysia teneuifolia (Korean grass) (KG), Digitaria didactyla (Serangoon grass) (SG), Cynodon dactylon (Tifdwarf) (TD), Paspalum notatum (Bahia grass) (BG) and Axonopus compressus (Pearl blue) (PB) suffered a 50% shoot growth reduction at 36.0, 31.8, 30.9, 28.4, 26.4, 25.7, 20.0 and 18.6 dSm-1 of salinity, respectively and a root growth reduction at 44.9, 43.7, 33.4, 31.0, 29.5 27.5, 21.5 and 21.4 dSm-1 of salinity, respectively. Leaf firing and turf quality of the selected species, as a whole, were also found to be affected harmoniously with the change in root and shoot growth. On the basis of the experimental results the selected species were ranked for salinity tolerance as JG>SA>BS>KG>SG >TD>BG>PB.

Effect of salinity on survival and growth of blue crab, Callinectes amnicola from Lagos Lagoon, Nigeria.

The effect of salinity on the survival and growth of Callinectes amnicola (De Rocheburne) from the Lagos Lagoon, Nigeria was monitored in the laboratory for 22 weeks. The crabs were euryhaline and tolerated a salinity range of 5 to 25‰ and had 90% survival at 15 and 20‰. The highest gain in weight (173.0%) and carapace width (56.1%) was obtained at salinity of 15‰. The highest specific growth rate (1.98) was obtained at 15‰, while the lowest specific growth rate (-0.28) was recorded at 35‰. The condition factor of the crabs showed a fairly consistent pattern at the different salinity levels with values ranging from 5.7 to 7.3. Complete moulting was obtained at salinity of 15‰ in the 12th week of the experiment. The crab with carapace width of 6.8cm increased to 8.1cm (19.1%) after moulting.

Genetic Engineering Progresses in Plant Resistance to Salt Stress / 中国生物工程杂志

Salinity is the main limitation factor for plant growth and crop production.Many approaches to enhance plant resistance to salinity by genetic engineering have been developed.Over-expressions of salt-tolerance related genes encoding proteins involved in signal transduction pathways,ion channels and compatible solutes synthesis for the stabilization of biological structures under salinity stress are the most often used strategies.The recent progresses in genetic engineering to improve salt tolerance in plants and the possible problems in researches was reviewed.