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1.
Int. braz. j. urol ; 41(2): 367-372, Mar-Apr/2015. tab, graf
Article in English | LILACS | ID: lil-748287

ABSTRACT

Objective The aim of active surveillance of early prostate cancer is to individualize therapy by selecting for curative treatment only patients with significant cancer. Epstein’s criteria for prediction of clinically insignificant cancer in surgical specimens are widely used. Epstein’s criterion “no single core with >50% cancer” has no correspondence in linear extent. The aim of this study is to find a possible correspondence. Materials and Methods From a total of 401 consecutive patients submitted to radical prostatectomy, 17 (4.2%) met criteria for insignificant cancer in the surgical specimen. The clinicopathologic findings in the correspondent biopsies were compared with Epstein’s criteria for insignificant cancer. Cancer in a single core was evaluated in percentage as well as linear extent in mm. Results Comparing the clinicopathologic findings with Epstein’s criteria predictive of insignificant cancer, there was 100% concordance for clinical stage T1c, no Gleason pattern 4 or 5, ≤2 cores with cancer, and no single core with >50% cancer. However, only 25% had density ≤0.15. The mean, median and range of the maximum length of cancer in a single core in mm were 1.19, 1, and 0.5-2.5, respectively. Additionally, the mean, median, and range of length of cancer in all cores in mm were 1.47, 1.5, and 0.5-3, respectively. Conclusion To pathologists that use Epstein’s criteria predictive of insignificant cancer and measure linear extent in mm, our study favors that “no single core with >50% cancer” may correspond to >2.5 mm in linear extent. .


Subject(s)
Polyketide Synthases/chemistry , Polyketide Synthases/ultrastructure , Streptomyces/enzymology , Biocatalysis , Catalytic Domain , Cryoelectron Microscopy , Fatty Acid Synthases/chemistry , Models, Molecular , Macrolides/metabolism , Polyketide Synthases/metabolism
2.
Indian J Biochem Biophys ; 2011 June; 48(3): 164-169
Article in English | IMSEAR | ID: sea-135315

ABSTRACT

The 3D structure of enoyl reductase (ER) domain generated by the SWISS MODEL server contains the 2-nitropropane dioxygenase (2NPD) structure displaying the TIM barrel fold. Though TIM barrel fold is made up of both main and inserted domains, in our study, we could only predict the structure of the main domain, which had central barrel of eight β-strands surrounded by eight α-helices. Superimposition of the 2NPD region of ER domain of Mycobacterium tuberculosis H37Rv on to the corresponding region of 2UVA_G revealed a good structural alignment between the two, suggesting this template to be a good structural homologue. Among various herbal ligands that were screened as inhibitors, daucosterol was found to bind in closest proximity to the flavin mono nucleotide (FMN) binding site with the lowest docking energy


Subject(s)
Amino Acid Sequence , Bacterial Proteins/chemistry , Binding Sites , Dioxygenases/chemistry , Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)/chemistry , Fatty Acid Synthases/chemistry , Ligands , Models, Molecular , Molecular Sequence Data , Mycobacterium tuberculosis/enzymology , Protein Conformation , Protein Structure, Secondary , Sequence Alignment/methods , Sequence Homology, Amino Acid
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