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1.
Rev. cuba. pediatr ; 90(4): e650, set.-dic. 2018. tab
Artículo en Español | LILACS, CUMED | ID: biblio-978469

RESUMEN

Introducción: Las distrofias musculares son las enfermedades degenerativas más comunes dentro de las enfermedades neuromusculares, cursan con debilidad muscular que progresa hasta la pérdida de la deambulación y en la segunda década de vida surgen complicaciones cardíacas, respiratorias y ortopédicas. Objetivo: Analizar el estado actual de los tratamientos génico y farmacológico en las distrofias musculares de Duchenne y Becker Métodos: Se realizó una búsqueda en los meses de enero, febrero y marzo de 2018 en las bases de datos Medline, Cinhal, Web Of Science y Scopus. Se obtuvieron 232 resultados y después de aplicar los criterios de inclusión y exclusión, se consiguieron para analizar 15 artículos válidos para la revisión. Resultados: Los artículos analizados investigan mayoritariamente el efecto de las terapias mencionadas a nivel de funcionalidad y de síntesis de la proteína distrofina durante períodos largos, en los que participan muestras de tamaño y edades variadas tanto como distrofia muscular de Duchenne y como distrofia muscular de Becker. Conclusiones: Existen más artículos enfocados en la distrofia muscular de Duchenne que en la distrofia muscular de Becker. Esto puede ser debido a que la primera es la más grave y de peor pronóstico. Sigue siendo necesario realizar más estudios para avanzar sobre el estado actual de estos tratamientos(AU)


Introduction: Muscular dystrophies are one of the most common degenerative pathologies within neuromuscular diseases. They present muscular weakness that develops until loss of wandering and in the second decade of life can appear cardiac, respiratory and orthopaedic complications. Objective: To know the current state of genetic and pharmacology treatments in the Duchenne and Becker muscular dystrophies. Methods: A search was made from January to March 2018 at Medline, Cinhal, Web Of Science and Scopus databases. 232 results were obtained, and applying the inclusion and exclusion criteria, 15 acceptable articles for reviewing were found. Results: Analyzed articles mostly investigate the effect of the mentioned therapies in the levels of functionality and dystrophin protein synthesis during long periods, in which samples of different sizes and ages are used. Conclusions: There are more articles focused on Duchenne Muscular Dystrophy than Becker Muscular Dystrophy. That can be due to the fact that the first is the most severe and with the worst prognosis. It is still necessary to carry out more scientific studies to move forward from the current stage of these treatments(AU)


Asunto(s)
Humanos , Distrofia Muscular de Duchenne/tratamiento farmacológico , Orden Génico/genética , Proteínas Relacionadas con la Folistatina/uso terapéutico , Edición Génica/métodos
2.
Experimental & Molecular Medicine ; : e153-2015.
Artículo en Inglés | WPRIM | ID: wpr-57313

RESUMEN

Lysosomal dysfunction is a common pathological feature of neurodegenerative diseases. GTP-binding protein type A1 (GBA1) encodes beta-glucocerebrosidase 1 (GCase 1), a lysosomal hydrolase. Homozygous mutations in GBA1 cause Gaucher disease, the most common lysosomal storage disease, while heterozygous mutations are strong risk factors for Parkinson's disease. However, whether loss of GCase 1 activity is sufficient for lysosomal dysfunction has not been clearly determined. Here, we generated human neuroblastoma cell lines with nonsense mutations in the GBA1 gene using zinc-finger nucleases. Depending on the site of mutation, GCase 1 activity was lost or maintained. The cell line with GCase 1 deficiency showed indications of lysosomal dysfunction, such as accumulation of lysosomal substrates, reduced dextran degradation and accumulation of enlarged vacuolar structures. In contrast, the cell line with C-terminal truncation of GCase 1 but with intact GCase 1 activity showed normal lysosomal function. When alpha-synuclein was overexpressed, accumulation and secretion of insoluble aggregates increased in cells with GCase 1 deficiency but did not change in mutant cells with normal GCase 1 activity. These results demonstrate that loss of GCase 1 activity is sufficient to cause lysosomal dysfunction and accumulation of alpha-synuclein aggregates.


Asunto(s)
Humanos , Línea Celular , Activación Enzimática/genética , Técnicas de Inactivación de Genes , Orden Génico , Sitios Genéticos , Glucosilceramidasa/genética , Lisosomas/metabolismo , Mutación , Agregación Patológica de Proteínas/genética , Unión Proteica , Dedos de Zinc , alfa-Sinucleína/química
3.
The Korean Journal of Parasitology ; : 719-726, 2013.
Artículo en Inglés | WPRIM | ID: wpr-197167

RESUMEN

Mitochondrial genomes have been extensively studied for phylogenetic purposes and to investigate intra- and interspecific genetic variations. In recent years, numerous groups have undertaken sequencing of platyhelminth mitochondrial genomes. Haplorchis taichui (family Heterophyidae) is a trematode that infects humans and animals mainly in Asia, including the Mekong River basin. We sequenced and determined the organization of the complete mitochondrial genome of H. taichui. The mitochondrial genome is 15,130 bp long, containing 12 protein-coding genes, 2 ribosomal RNAs (rRNAs, a small and a large subunit), and 22 transfer RNAs (tRNAs). Like other trematodes, it does not encode the atp8 gene. All genes are transcribed from the same strand. The ATG initiation codon is used for 9 protein-coding genes, and GTG for the remaining 3 (nad1, nad4, and nad5). The mitochondrial genome of H. taichui has a single long non-coding region between trnE and trnG. H. taichui has evolved as being more closely related to Opisthorchiidae than other trematode groups with maximal support in the phylogenetic analysis. Our results could provide a resource for the comparative mitochondrial genome analysis of trematodes, and may yield genetic markers for molecular epidemiological investigations into intestinal flukes.


Asunto(s)
Animales , Humanos , Asia , Codón Iniciador , ADN Mitocondrial/química , Orden Génico , Genes de Helminto , Genoma Mitocondrial , Heterophyidae/genética , Datos de Secuencia Molecular , Análisis de Secuencia de ADN
4.
Laboratory Animal Research ; : 33-38, 2013.
Artículo en Inglés | WPRIM | ID: wpr-31695

RESUMEN

The C57BL/6J-fe/fe mouse is a coat color mutant. The coat color of the homozygote mouse becomes progressively lighter with advancing age. The faded gene (fe) of C57BL/6J-fe/fe was mapped in a 2.0 cM distal to D10mit191 by our group. To make a high-resolution map, we used the Korean wild mouse (KWHM) for a backcross panel, which was captured in 1995 and has been maintained as an inbred line by our laboratory. In the inter-specific backcross panel (N=400), the fe gene was mapped to 1.0 cM distal to D10mit156. The gene order was defined: centromere -D10mit3/85 (1.3+/-0.6 cM)-D10mit155 (1.3+/-0.6 cM)-D10mit191 (2.0+/-0.7 cM)-D10mit156 (1.0+/-0.5 cM)-fe-D10mit193 (1.3+/-0.6 cM)-D10mit54 (1.0+/-0.5 cM)-D10mit44 (8.5+/-1.4 cM)-D10mit42 (10.0+/-1.5 cM). The measured distance between D10mit191 and D10mit 44 differed in both inter-specific (DBA/2) and intra-specific (KWHM) backcross panels (14.2 vs 13.8 cM). Taken together, our high-resolution linkage map of the fe locus from an intra-specific backcross panel will provide a good entry point to isolate the fe gene.


Asunto(s)
Animales , Ratones , Centrómero , Cromosomas Humanos Par 10 , Orden Génico , Color del Cabello , Homocigoto
5.
Chinese Journal of Medical Genetics ; (6): 49-54, 2013.
Artículo en Chino | WPRIM | ID: wpr-232207

RESUMEN

<p><b>OBJECTIVE</b>To develop a method for elucidating genetic basis of 21-hydroxylase deficiency.</p><p><b>METHODS</b>Sanger sequencing of entire 21-hydroxylase coding gene CYP21A2 was carried out to detect point mutations, and multiplex ligation-dependent probe amplification (MLPA) and locus-specific PCR/enzyme restriction method were used to detect large deletions and conversion mutations.</p><p><b>RESULTS</b>Nine children were analyzed. Point mutations of the CYP21A2 gene have been identified as: IVS2 13A/C>G (9 alleles), p.Arg356Trp (1 allele), Cluster E6 (1 allele), p.Gln318X (1 allele), and Prom conv (1 allele). While the former 4 mutations are pathogenic, the role of Prom conv mutation in the pathogenesis was uncertain. Three cases had entire CYP21A2 gene deletions (3 alleles), three had CYP21A1P/CYP21A2 chimeric mutations (3 alleles). The genotypes of all patients were determined. And all of the mutations were inherited from parents.</p><p><b>CONCLUSION</b>A rational method for detecting point mutations and large deletions/conversions of CYP21A2 gene has been established.</p>


Asunto(s)
Niño , Preescolar , Femenino , Humanos , Lactante , Masculino , Hiperplasia Suprarrenal Congénita , Diagnóstico , Genética , Alelos , Secuencia de Bases , Orden Génico , Genotipo , Reacción en Cadena de la Polimerasa Multiplex , Esteroide 21-Hidroxilasa , Genética
6.
Chinese Journal of Medical Genetics ; (6): 55-59, 2013.
Artículo en Chino | WPRIM | ID: wpr-232206

RESUMEN

<p><b>OBJECTIVE</b>To assess the association between SIRT1 gene polymorphisms and the longevity phenomena in Yongfu region of Guangxi. In this case-control study, 500 individuals from Yongfu region of Guangxi were recruited. The subjects were divided into a longevity group (n=223, average age=93.17 U+00B1 3.08 yr) and a healthy control group (n=277, average age=46.92 U+00B1 17.12 yr). Polymerase chain reaction-high resolution melting curve (PCR-HRM) and DNA sequencing were used to determine the allelic and genotypic frequencies of rs3758391, rs3740051, rs2273773, rs4746720 and rs10997870 polymorphisms of SIRT1 gene in the two groups. The association between above polymorphisms and longevity was assessed.</p><p><b>RESULTS</b>In the longevity group, CT genotype of the rs4746720 locus was significantly more common than CC and TT genotypes (P=0.000, OR=2.098, 95%CI:1.412-4.117). However, no significant difference was found in the allelic and genotypic frequencies of rs3758391, rs3740051 and rs2273773 between the two groups.</p><p><b>CONCLUSION</b>There is an association between rs4746720 of SIRT1 gene and longevity in Yongfu region of Guangxi.</p>


Asunto(s)
Adulto , Anciano , Anciano de 80 o más Años , Femenino , Humanos , Masculino , Persona de Mediana Edad , Adulto Joven , Alelos , Pueblo Asiatico , Genética , Secuencia de Bases , Estudios de Casos y Controles , China , Frecuencia de los Genes , Orden Génico , Estudios de Asociación Genética , Genotipo , Longevidad , Genética , Polimorfismo de Nucleótido Simple , Sirtuina 1 , Genética
7.
Chinese Journal of Medical Genetics ; (6): 251-255, 2011.
Artículo en Chino | WPRIM | ID: wpr-326953

RESUMEN

<p><b>OBJECTIVE</b>Mutation screening was performed in a pedigree of Glanzmann's thrombasthenia (GT) and prenatal diagnosis was performed.</p><p><b>METHODS</b>In this study, reverse transcription-PCR-sequencing and PCR-sequencing, as well as restriction fragment length polymorphism(RFLP) and A/T-cloned-sequencing, were used to screen the ITGA2B and ITGB3 mutation in a pedigree with Glanzmann's thrombasthenia in the RNA and DNA level. Prenatal diagnosis was performed for this pedigree.</p><p><b>RESULTS</b>Deletion of 99 bps was found in the cDNA of the patient in the pedigree, leading to deletion of 33 codons (from codon 160 to 192). After genomic analysis, the patient was found to be a compound heterozygote of c.374C to G mutation and intron 4(IVS-4) + 5 G to C mutation. The two mutations were inherited from the parents. IVS-4 + 5 G to C mutation was a point mutation in the splice site, while c.374C to G mutation was out of the splice site. But both of them resulted in the same splice pattern in RNA. The two mutations were novel mutations which have not been reported in Human Gene Mutation Database (HGMD) and the mutation data base of Glanzmann's thrombasthenia. The results of ITGB3 gene screening is normal in the proband and his parents.</p><p><b>CONCLUSION</b>Two novel mutation, c.374C to G and IVS-4 + 5 G to C were found in this study, which might be the cause of GT in the pedigree.</p>


Asunto(s)
Preescolar , Femenino , Humanos , Masculino , Embarazo , Secuencia de Bases , Orden Génico , Pruebas Genéticas , Genotipo , Datos de Secuencia Molecular , Mutación , Genética , Linaje , Complejo GPIIb-IIIa de Glicoproteína Plaquetaria , Química , Genética , Diagnóstico Prenatal , Conformación Proteica , Trombastenia , Diagnóstico , Genética
8.
Chinese Journal of Medical Genetics ; (6): 606-611, 2011.
Artículo en Chino | WPRIM | ID: wpr-326883

RESUMEN

<p><b>OBJECTIVE</b>To investigate the type and frequency of gene conversion from SMN1 to SMN2 in Chinese patients affected with spinal muscular atrophy (SMA), and to explore the relationship between gene conversion and clinical phenotype.</p><p><b>METHODS</b>Non-homozygous deletion of SMN1 gene exon 8 was screened among 417 patients with SMN1 exon 7 homozygous deletions. To analyze and verify the types of gene conversion, genomic DNA sequencing, multiplex ligation-dependent probe amplification (MLPA), and gene subcloning and sequencing were carried out.</p><p><b>RESULTS</b>Thirty-one patients (7.4% of all) with non-homozygous deletions of SMN1 exon 8 were detected. Through series of experiments, the fusion genes SMN1/SMN2 in all cases were delineated. Five types of gene conversions were identified, which included SMN2-I7b/SMN1 E8, SMN2-I7a/SMN1 I7b, SMN2-E7/SMN1 I7a, SMN1 I6/SMN2 E7/SMN1 I7a and SMN2-E7/SMN1 I7a/SMN2 I7b. Such conversions were found in the type I-III patients. For 10 patients with type I-III SMA and 3 copies of SMN2 gene produced by conversion, the average survival age was 5 year and 4 months.</p><p><b>CONCLUSION</b>Partial conversions of SMN1 gene have been found among Chinese SMA patients. The type of conversion and frequency seem to be different from those of other races. Gene conversion to some extent may impact on survival time and rate of SMA patients, especially type I SMA.</p>


Asunto(s)
Niño , Preescolar , Femenino , Humanos , Lactante , Masculino , Secuencia de Bases , Exones , Conversión Génica , Orden Génico , Homocigoto , Atrofia Muscular Espinal , Genética , Fenotipo , Análisis de Secuencia de ADN , Proteína 1 para la Supervivencia de la Neurona Motora , Genética , Proteína 2 para la Supervivencia de la Neurona Motora , Genética
9.
Chinese Journal of Virology ; (6): 409-415, 2011.
Artículo en Chino | WPRIM | ID: wpr-286020

RESUMEN

The study aimed to construct the amplicon vector of HSV-1 strain HF and explore its universal package function between different serotypes of HSV. OriS and pac elements were obtained by enzyme digestion from the Plasmid BAC-HSV-1 strain HF and sequenced. With red fluorescence (DsRed) as a reporter gene, the amplicon vector of HSV-1 strain HF was constructed based on pSilencer2.0-U6. The amplicon vector was transfected into Vero cells by lipofectamine 2000, then packaged by HSV-1 strain HF and HSV-2 strain HG52 as helper virus separately. The supernatant was collected after cytopathic effect. Red fluorescence was observed in Vero cells reinfected by the supernatant. In this study,the amplicon vector of HSV-1 strain HF was successfully constructed and it could be packaged by HSV-1 strain HF and HSV-2 strainHG52.


Asunto(s)
Animales , Secuencia de Bases , Chlorocebus aethiops , Orden Génico , Genes Virales , Genética , Vectores Genéticos , Genética , Herpesvirus Humano 1 , Clasificación , Genética , Herpesvirus Humano 2 , Genética , Datos de Secuencia Molecular , Origen de Réplica , Genética , Serotipificación , Células Vero
10.
China Journal of Chinese Materia Medica ; (24): 361-365, 2011.
Artículo en Chino | WPRIM | ID: wpr-289366

RESUMEN

<p><b>OBJECTIVE</b>To study the function of the chalcone synthese gene introns in Scutellaria baicalensis, and clarify preliminarily their role in abiotic stress.</p><p><b>METHOD</b>The CHS introns with specific primers were cloned and bioinformatic method was applied to predict the cis-elements in the intron of CHS. The introns were subcloned into binary vector, pCAMBIA-1301 before being transferred to tobacco. Then the activity of GUS of the transgenic tobacco seeds was analyzed.</p><p><b>RESULT</b>Seven cis-elements were found in the introns. Under the dark and high temperature GUS expression rose at the first (3 h), but then declined (9 h). ABA and MeJA regulated insignificantly the GUS activity in normal temperature; treatment of 10% PEG induced GUS expression.</p><p><b>CONCLUSION</b>CHS introns could be play a role in the regulation of S. baicalensis phenylpropanoid biosynthetic pathway.</p>


Asunto(s)
Aciltransferasas , Genética , Secuencia de Bases , Regulación de la Expresión Génica de las Plantas , Orden Génico , Vectores Genéticos , Intrones , Datos de Secuencia Molecular , Plantas Modificadas Genéticamente , Genética , Metabolismo , Polietilenglicoles , Farmacología , Secuencias Reguladoras de Ácidos Nucleicos , Genética , Scutellaria baicalensis , Genética , Alineación de Secuencia , Nicotiana , Genética , Metabolismo
11.
Chinese Journal of Medical Genetics ; (6): 630-633, 2011.
Artículo en Chino | WPRIM | ID: wpr-295566

RESUMEN

<p><b>OBJECTIVE</b>To investigate potential mutation of the ASS1 gene in a male infant with acute citrullinemia type I.</p><p><b>METHODS</b>Genomic DNA was prepared from peripheral blood samples of the family members. Mutation analysis of the 14 ASS1 exons was carried out by PCR and direct DNA sequencing.</p><p><b>RESULTS</b>A homozygous missense mutation of c.970G>A located in exon 13, which results in p.G324S, was identified in the child. Sequencing of the parents showed a heterozygous status for the same mutation.</p><p><b>CONCLUSION</b>A missense mutation of c.970G>A in the ASS1 gene is responsible for the pathogenesis of the disease in the infant.</p>


Asunto(s)
Humanos , Lactante , Masculino , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Argininosuccinato Sintasa , Química , Genética , Secuencia de Bases , Citrulinemia , Genética , Orden Génico , Modelos Moleculares , Datos de Secuencia Molecular , Mutación Missense , Conformación Proteica , Alineación de Secuencia , Análisis de Secuencia de ADN
12.
Chinese Journal of Medical Genetics ; (6): 670-674, 2011.
Artículo en Chino | WPRIM | ID: wpr-295557

RESUMEN

<p><b>OBJECTIVE</b>To establish a comprehensive and simple assay using denaturing high performance liquid chromatography (DHPLC) for the diagnosis of most common mutations and deletions of α-thalassemia gene in Southeast Asians and Southern Chinese.</p><p><b>METHODS</b>This assay has included a duplex polymerase chain reaction (PCR) followed by DHPLC analysis. An improved PCR was also performed followed by DHPLC analysis. With this assay, a blinded study of 160 samples was screened for three common mutations and three common deletions.</p><p><b>RESULTS</b>The duplex PCR-DHPLC combined with the improved PCR-DHPLC analysis has detected all mutations and the wild-type allele. The results were consistent with those by the original methods.</p><p><b>CONCLUSION</b>This molecular assay may be used for the diagnosis of α-thalassemia patients from this geographical region. The method is accurate, rapid, semi-automatic and cost-effective, which makes it suitable for large-scale screening.</p>


Asunto(s)
Humanos , Cromatografía Líquida de Alta Presión , Métodos , Análisis Mutacional de ADN , Métodos , Orden Génico , Genotipo , Globinas alfa , Genética , Talasemia alfa , Diagnóstico , Genética
13.
Experimental & Molecular Medicine ; : 71-81, 2011.
Artículo en Inglés | WPRIM | ID: wpr-186266

RESUMEN

There is increasing evidence of a biochemical link between lipid oxidation and bone metabolism. Paraoxonase 1 (PON1) prevents the oxidation of low-density lipoprotein (LDL) and metabolizes biologically active phospholipids in oxidized LDLs. Here, we performed association analyses of genetic variation in PON1 to ascertain its contribution to osteoporotic fractures (OFs) and bone mineral density (BMD). We directly sequenced the PON1 gene in 24 Korean individuals and identified 26 sequence variants. A large population of Korean postmenopausal women (n = 1,329) was then genotyped for eight selected PON1 polymorphisms. BMD at the lumbar spine and femoral neck was measured using dual-energy X-ray absorptiometry. Lateral thoracolumbar (T4-L4) radiographs were obtained for vertebral fracture assessment, and the occurrence of non-vertebral fractures (i.e., wrist, hip, forearm, humerus, rib, and pelvis) was examined using self-reported data. Multivariate analyses showed that none of the polymorphisms was associated with BMD at either site. However, +5989A>G and +26080T>C polymorphisms were significantly associated with non-vertebral and vertebral fractures, respectively, after adjustment for covariates. Specifically, the minor allele of +5989A>G exerted a highly protective effect against non-vertebral fractures (OR = 0.59, P = 0.036), whereas the minor allele of +26080T>C was associated with increased susceptibility to vertebral fractures (OR = 1.73, P = 0.020). When the risk for any OFs (i.e., vertebral or non-vertebral) was considered, the statistical significance of both polymorphisms persisted (P = 0.002-0.010). These results suggest that PON1 polymorphisms could be one of useful genetic markers for OF risk in postmenopausal women.


Asunto(s)
Anciano , Femenino , Humanos , Masculino , Persona de Mediana Edad , Alelos , Arildialquilfosfatasa/genética , Densidad Ósea , Frecuencia de los Genes , Orden Génico , Marcadores Genéticos , Predisposición Genética a la Enfermedad , Haplotipos , Corea (Geográfico)/epidemiología , Desequilibrio de Ligamiento , Tipificación Molecular , Fracturas Osteoporóticas/epidemiología , Polimorfismo Genético , Posmenopausia , Factores de Riesgo
14.
Laboratory Animal Research ; : 41-46, 2011.
Artículo en Inglés | WPRIM | ID: wpr-227295

RESUMEN

The faded mouse is a coat color mutant that shows faded coat color and age-related loss of pigmentation. This mutation is transmitted by an autosomal recessive gene with 100% penetrance. In the present study, we carried out linkage analysis of the faded (fe) gene using intra-specific backcross panels. Affected faded mice were carefully confirmed by their faded coat color at about 4 weeks of age. In the intra-specific backcross between faded and CBA mice (n=198), the fe gene was mapped to a region 2.1 cM distal to D10mit191. Therefore, the gene order was defined as follows: centromere-D10mit51 (12.4+/-2.4 cM)-D10mit191 (2.1+/-1.0 cM)-fe-D10mit44 (13.3+/-2.4 cM)-D10mit42 (14.4+/-2.5 cM). This linkage map of the fe locus will provide a good entry point to isolate the fe gene. Since the faded mouse has pigmentary abnormalities, this mutant may be a useful model for studies of pigmentary abnormalities in humans.


Asunto(s)
Animales , Humanos , Ratones , Cromosomas Humanos Par 10 , Orden Génico , Genes Recesivos , Ratones Endogámicos CBA , Penetrancia , Pigmentación
15.
J Genet ; 2008 Aug; 87(2): 141-6
Artículo en Inglés | IMSEAR | ID: sea-114277

RESUMEN

The gene EG:22E5.5 or CG4199 (accession number O77266, Q9W529) from Berkeley Drosophila Genome Project (BDGP) was found using the partial amino acid sequences of three tryptic peptides obtained from purified Drosophila virilis diaphorase-1. This gene is located on the X chromosome at position 2C9-2C10. The structure of the gene reveals three exons and two long introns. Using BDGP, we found six transcripts in this gene. The difference between these transcripts is in their 5' ends; the 3' ends of the six transcripts are identical. Thirty-four ESTs from different cDNA libraries were found, most of them from Schneider L2 cell culture (SH) cDNA library. The transcripts are represented at very low level in the cells of different organs and at different stages of Drosophila development. Using RT-PCR, we obtained five of these transcripts in cDNA samples from female adult flies. However, we could not find any of them in cDNA samples from male adult flies. Moreover, we obtained only the third transcript (CG4199-RC) in the sample of testis from adult flies and the fourth transcript (CG4199-RD) in an embryo sample. None of the other five transcripts were found in the samples of different organs and in the samples obtained at different stages of Drosophila development.


Asunto(s)
Secuencia de Aminoácidos , Animales , ADN Complementario/genética , Proteínas de Drosophila/química , Exones/genética , Femenino , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Regulación Enzimológica de la Expresión Génica , Orden Génico , Intrones/genética , Masculino , Datos de Secuencia Molecular , Especificidad de Órganos , Reacción en Cadena de la Polimerasa , ARN Mensajero/genética , Alineación de Secuencia , Caracteres Sexuales
16.
J Biosci ; 2007 Aug; 32(5): 1019-25
Artículo en Inglés | IMSEAR | ID: sea-110707

RESUMEN

A central step in the analysis of gene expression data is the identification of groups of genes that exhibit similar expression patterns. Clustering and ordering the genes using gene expression data into homogeneous groups was shown to be useful in functional annotation, tissue classification, regulatory motif identification, and other applications. Although there is a rich literature on gene ordering in hierarchical clustering framework for gene expression analysis, there is no work addressing and evaluating the importance of gene ordering in partitive clustering framework, to the best knowledge of the authors. Outside the framework of hierarchical clustering, different gene ordering algorithms are applied on the whole data set, and the domain of partitive clustering is still unexplored with gene ordering approaches. A new hybrid method is proposed for ordering genes in each of the clusters obtained from partitive clustering solution, using microarray gene expressions.Two existing algorithms for optimally ordering cities in travelling salesman problem (TSP), namely, FRAG_GALK and Concorde, are hybridized individually with self organizing MAP to show the importance of gene ordering in partitive clustering framework. We validated our hybrid approach using yeast and fibroblast data and showed that our approach improves the result quality of partitive clustering solution, by identifying subclusters within big clusters, grouping functionally correlated genes within clusters, minimization of summation of gene expression distances, and the maximization of biological gene ordering using MIPS categorization. Moreover, the new hybrid approach, finds comparable or sometimes superior biological gene order in less computation time than those obtained by optimal leaf ordering in hierarchical clustering solution.


Asunto(s)
Algoritmos , Biología Computacional/métodos , Perfilación de la Expresión Génica , Regulación de la Expresión Génica/fisiología , Orden Génico/genética , Humanos , Modelos Genéticos , Familia de Multigenes/fisiología , Análisis de Secuencia por Matrices de Oligonucleótidos , Proteínas de Saccharomyces cerevisiae/genética
17.
Chinese Journal of Biotechnology ; (12): 201-205, 2007.
Artículo en Chino | WPRIM | ID: wpr-325393

RESUMEN

1,3-propanediol production by microbial fermentation has become the research hot spot for its amiability with the environment. Here the molecular mechanism of glycerol bioconversion to 1,3-propanediol was outlined by elucidating the fermentation strains, metabolic pathways, regulon and key enzymes. Of enzymes, glycerol dehydrogenase, the velocity-limiting enzyme in glycerol reductive pathway, was emphatically discussed with regard to its molecular structure and reactivating factors. This paper aims to provide the basis for genetic modification of fermentation strains.


Asunto(s)
Bacterias , Genética , Metabolismo , Proteínas Bacterianas , Genética , Metabolismo , Vías Biosintéticas , Fermentación , Orden Génico , Glicerol , Metabolismo , Hidroliasas , Genética , Metabolismo , Microbiología Industrial , Métodos , Glicoles de Propileno , Metabolismo , Deshidrogenasas del Alcohol de Azúcar , Genética , Metabolismo
18.
The Korean Journal of Parasitology ; : 21-26, 2006.
Artículo en Inglés | WPRIM | ID: wpr-96037

RESUMEN

A shuttle vector for Escherichia coli and Giardia lamblia was modified to produce a reporter plasmid, which monitors the expression of prescribed gene in G. lamblia by measuring its luciferase activity. Promoter regions of the gap2 gene, one of the genes induced during encystation, were cloned into this plasmid, and the resultant constructs were then transfected into trophozoites of G. lamblia. Transgenic trophozoites containing one of the 3 gap2-luc reporters were induced to encystation, and characterized with respect to gap2 gene expression by measuring their luciferase activities. Giardia containing a gap2-luc fusion of 112-bp upstream region showed full induction of luciferase activity during encystation.


Asunto(s)
Animales , Transfección/métodos , Factores de Tiempo , Proteínas Recombinantes de Fusión/análisis , Regiones Promotoras Genéticas/fisiología , Plásmidos , Luciferasas/genética , Estadios del Ciclo de Vida/fisiología , Giardia lamblia/genética , Ingeniería Genética/métodos , Genes Reporteros/genética , Genes Protozoarios/genética , Orden Génico , Expresión Génica/genética , Proteínas Activadoras de GTPasa/genética , Southern Blotting/métodos
19.
Korean Journal of Dermatology ; : 413-419, 2001.
Artículo en Coreano | WPRIM | ID: wpr-130006

RESUMEN

BACKGROUND: Mycosis fungoides(MF) is a representative of cutaneous T cell lymphoma and progresses through clinical stages, such as initial pre-mycotic(macule or patch), plaque, and tumor stage. MF is usually thought of as a disease of old adults, but it can develop at any age, including childhood. Despite the recognition that MF may occur in pediatric patients, there is scant literature regarding clinical feature, histopathologic finding and prognosis specially related to childhood onset. The purpose of this study was to examine the clinical, histopathologic and follow up observation of MF in children. METHODS:This study has been reviewed in the clinicopathologic findings of 14 MF patients who visited the Kosin University Gospel Hospital during about 10 years from January, 1991 to June, 2000. RESULTS: 1.Duration of cutaneous lesions was from 6 months to 10 years, with mean duration of 3.6 years. 2.The morphology of skin lesions showed various features(pityriasis lichenoides-like, hypopigmented, hyperpigmented, ichthyosis-like, inflammatory linear verrucous epidermal nevus-like). 3. Histopathologic features revealed epidermotropism, a perivascular infiltrate in all cases, haloed lymphocytes, lymphocytes aligned in the basal layer, and coarse collagen in the papillary dermis in most cases. Pautrier's microabscess was shown in 3 cases(23%). 4. In T cell receptor gamma gene arrangement using PCR(polymerase chain reaction), monoclonality was detected in 13 out of 14(93%). 5. Treatment including PUVA(psoralen and UVA), UVB, topical steroid agents and calcipotriol had good a response. 6. No patients had progressed to a more advanced disease. CONCLUSION: MF in children of this study showed a wide variety of skin lesions. Although no case of MF in this study progressed to a more aggressive status, MF in children should be carefully followed for development of more advanced cutaneous lesions and visceral involvement.


Asunto(s)
Adulto , Niño , Humanos , Colágeno , Dermis , Estudios de Seguimiento , Orden Génico , Linfocitos , Linfoma Cutáneo de Células T , Micosis Fungoide , Pronóstico , Receptores de Antígenos de Linfocitos T , Piel
20.
Korean Journal of Dermatology ; : 413-419, 2001.
Artículo en Coreano | WPRIM | ID: wpr-129991

RESUMEN

BACKGROUND: Mycosis fungoides(MF) is a representative of cutaneous T cell lymphoma and progresses through clinical stages, such as initial pre-mycotic(macule or patch), plaque, and tumor stage. MF is usually thought of as a disease of old adults, but it can develop at any age, including childhood. Despite the recognition that MF may occur in pediatric patients, there is scant literature regarding clinical feature, histopathologic finding and prognosis specially related to childhood onset. The purpose of this study was to examine the clinical, histopathologic and follow up observation of MF in children. METHODS:This study has been reviewed in the clinicopathologic findings of 14 MF patients who visited the Kosin University Gospel Hospital during about 10 years from January, 1991 to June, 2000. RESULTS: 1.Duration of cutaneous lesions was from 6 months to 10 years, with mean duration of 3.6 years. 2.The morphology of skin lesions showed various features(pityriasis lichenoides-like, hypopigmented, hyperpigmented, ichthyosis-like, inflammatory linear verrucous epidermal nevus-like). 3. Histopathologic features revealed epidermotropism, a perivascular infiltrate in all cases, haloed lymphocytes, lymphocytes aligned in the basal layer, and coarse collagen in the papillary dermis in most cases. Pautrier's microabscess was shown in 3 cases(23%). 4. In T cell receptor gamma gene arrangement using PCR(polymerase chain reaction), monoclonality was detected in 13 out of 14(93%). 5. Treatment including PUVA(psoralen and UVA), UVB, topical steroid agents and calcipotriol had good a response. 6. No patients had progressed to a more advanced disease. CONCLUSION: MF in children of this study showed a wide variety of skin lesions. Although no case of MF in this study progressed to a more aggressive status, MF in children should be carefully followed for development of more advanced cutaneous lesions and visceral involvement.


Asunto(s)
Adulto , Niño , Humanos , Colágeno , Dermis , Estudios de Seguimiento , Orden Génico , Linfocitos , Linfoma Cutáneo de Células T , Micosis Fungoide , Pronóstico , Receptores de Antígenos de Linfocitos T , Piel
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