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J Biosci ; 2005 Dec; 30(5): 657-67
Article Dans Anglais | IMSEAR | ID: sea-110857

Résumé

In an attempt to determine a cold defense mechanism in plants, we have attempted to characterize changes occurring in the expression of cold-regulated transcript levels in the hot pepper (Capsicum annum), using cDNA microarray analysis, combined with Northern blot analysis. After analysing a 3.1 K hot pepper cDNA microarray, we isolated a total of 317 cold inducible genes. We selected 42 genes which were up-regulated and three genes which were down-regulated due to cold treatment, for further analysis. Among the 45 genes which appeared to be up-regulated by cold, 19 genes appeared to be simultaneously regulated by salt stress. Among the up-regulated cold-stress genes, we identified a variety of transcription factors, including: a family of 4 ethylene-responsive element binding protein (EREBP, designated CaEREBP-C1 to C4) genes, a bZIP protein (CaBZ1), RVA1, Ring domain protein, HSF1, and the WRKY (CaWRKY1) protein. As mentioned earlier, several genes appeared to be induced not only by cold stress, but also simultaneously by salt stress. These genes included: CaEREBP-C3, CaBZ1, putative trans-activator factor, NtPRp27, malate dehydrogenase, putative auxin-repressed protein, protein phosphatase (CaTPP1), SAR8.2 protein precursor, late-embryogenesis abundant protein 5 (LEA5), DNAJ protein homologue, xyloglucanendo-1,4-beta-D-gucanase precursor, PR10, and the putative non-specific lipid transfer protein StnsLTP.


Sujets)
Séquence d'acides aminés , Technique de Northern/méthodes , Capsicum/génétique , Basse température , Séquence consensus , Protéines de liaison à l'ADN/composition chimique , Déshydratation/génétique , Régulation négative , Congélation , Expression des gènes/génétique , Analyse de profil d'expression de gènes , Régulation de l'expression des gènes végétaux/génétique , Protéines à homéodomaine/composition chimique , Données de séquences moléculaires , Séquençage par oligonucléotides en batterie/méthodes , Phylogenèse , Protéines végétales/composition chimique , Similitude de séquences d'acides nucléiques , Chlorure de sodium , Facteurs de transcription/composition chimique , Régulation positive
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