Exploration of the core genes in ulcerative interstitial cystitis/bladder pain syndrome

ABSTRACT Objective: Interstitial cystitis (IC)/bladder pain syndrome (BPS) is a chronic inflammatory disease that can cause bladder pain and accompanying symptoms, such as long-term urinary frequency and urgency. IC/BPS can be ulcerative or non-ulcerative. The aim of this study was to explore the core genes involved in the pathogenesis of ulcerative IC, and thus the potential biomarkers for clinical treatment. Materials and Methods: First, the gene expression dataset GSE11783 was downloaded using the Gene Expression Omnibus (GEO) database and analyzed using the limma package in R to identify differentially expressed genes (DEGs). Then, the Database for Annotation, Visualization and Integrated Discovery (DAVID) was used for Gene Ontology (GO) functional analysis, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) was used for pathway enrichment analysis. Finally, the protein-protein interaction (PPI) network was constructed, and key modules and hub genes were determined using the STRING and Cytoscape software. The resulting key modules were then analyzed for tissue-specific gene expression using BioGPS. Results: A total of 216 up-regulated DEGs and 267 down-regulated genes were identified, and three key modules and nine hub genes were obtained. Conclusion: The core genes (CXCL8, CXCL1, IL6) obtained in this study may be potential biomarkers of interstitial cystitis with guiding significance for clinical treatment.

BONE FRAGILITY, FRACTURE RISK AND TRAUMA:A COMPLICATED TRIANGLE IN CHILDREN / FRAGILIDADE ÓSSEA, RISCO DE FRATURA E TRAUMA:UM TRIÂNGULO COMPLICADO EM CRIANÇAS

ABSTRACT Objective: To analyze whether association between bone fragility and risk of fracture depends on the trauma level. Method: All participants along with their mothers underwent DXA scan and body measurements. The subjects answered a self-report questionnaire about their physical activities and the precipitating causes. The questionnaire results were associated with DXA performed at the baseline visit. Results: A total 374 children with available DXA scan and complete follow-up of 5 years were included in the final analysis. Of the 374 children, 53 (14.2%) had one fracture, and 11 (20.7%) had more than one fracture. Based on the modified Landin classification, the trauma level was determined. Of the 53 (14.2%) children who had one fracture, 39 (73.6%) were classified, namely 19 (48.7%) with mild trauma, 16 (41%) with moderate trauma and four (10.2%) with severe trauma. Trauma level could not be assigned to 14 (26.4%) children due to limited information. Children without fractures had significantly higher values in all bone parameters compared to those with fractures caused by mild trauma. Conclusion: Subjects with mild trauma fractures had an inversely proportional ratio between bone fragility parameters and fracture risk compared with subjects without fractures. Level of Evidence IV, Case Series.

RESUMO Objetivo: Analisar se a associação entre fragilidade óssea e risco de fratura depende do nível de trauma. Método: Todos os participantes, juntamente com suas mães, foram submetidos à DEXA e medições corporais. Os participantes responderam um questionário de autorrelato sobre atividades físicas e descrição de como o trauma ocorreu. Os resultados do questionário foram associados à DEXA realizada na primeira visita do estudo. Resultados: Um total de 374 crianças com DEXA disponível e acompanhamento completo de 5 anos foi incluído na análise final. Das 374 crianças, 53 (14,2%) tiveram uma fratura e 11 (20,7%) tiveram mais de uma fratura. Com base na classificação de Landin modificada, foi determinado o nível de trauma. Das 53 (14,2%) crianças que tiveram uma fratura, 39 (73,6%) foram classificadas, sendo 19 (48,7%) com trauma leve, 16 (41%) com trauma moderado e quatro (10,2%) com trauma grave. O nível de trauma não pôde ser atribuído a 14 (26,4%) crianças, devido a informações limitadas. As crianças sem fraturas apresentaram valores significantemente mais altos em todos os parâmetros ósseos, em comparação com os que tinham fraturas causadas por trauma leve. Conclusão: Os indivíduos com fraturas por trauma leve apresentaram relação inversamente proporcional entre os parâmetros fragilidade óssea e o risco de fratura em comparação com indivíduos sem fratura. Nível de Evidência IV, Série de Casos .

Identification of SSR markers using soybean (Glycine max) ESTs from globular stage embryos

Microsatellites, or simple sequence repeats (SSRs), in expressed sequence tags (ESTs) provide an opportunity for low cost SSR development. We looked for EST-SSRs in 403,511 ESTs (generated by 454 sequencing and representing 70,654 contigs and 52,082 singletons) from soybean globular stage embryos. Among 122,736 unique ESTs, 3,729 contained one or more SSRs. In total, 3,989 SSRs were identified including 304 mono, 1,374 di, 2,208 tri, 70 tetra, 13 penta and 20 hexanucleotide SSRs. Thirty three EST-SSRs were selected for primer design and polymorphism analysis using twenty soybean cultivars and one wild-type soybean. Successful amplification was obtained using 21 of these primer pairs, 11 of which detected polymorphisms in these soybean cultivars. These results demonstrated that 454 high throughput sequencing is a powerful tool for molecular marker development. From the 3,989 identified SSRs we expect to obtain a large number of makers with polymorphism among different soybean cultivars, which would be useful for analysis of genetic diversity and maker assisted selection in the soybean breeding programs.