A review of the recent advances on Lassa fever with special reference to molecular epidemiology and progress in vaccine development

Lassa fever, a viral hemorrhagic fever caused by the Lassa virus (LASV), is endemic in West Africa and is associated with high morbidity and mortality. At least three of the four proposed seven lineages of LASV are found in Nigeria, where the multimammate rat, Mastomys natalensis, serves as the primary reservoir. Endemic countries report approximately 200,000 infections and 5,000 deaths annually, with Nigeria experiencing thousands of infections and hundreds of deaths including healthcare workers. The aim of this review is to provide scientific information for better understanding of the evolutionary biology, molecular epidemiology, pathogenesis, diagnosis, and prevention of Lassa fever in Nigeria and other endemic regions worldwide, which can lead to improved control efforts and reduce morbidity and mortality from recurrent epidemics. To achieve this aim, observational studies such as case series, cross-sectional and cohort studies published between December 2017 and September 2022 were searched for on various online databases including Google Scholar, Africa Journals Online (AJOL), Research Gates, PubMed, PMIC, NCDC, and WHO websites. Although the origin and evolutionary history, and the transmission dynamics of Lassa virus have been revealed through recent. molecular epidemiological studies, the factors that drive the evolution of the virus remain unclear. Genetic changes in the viral genome may have enabled the virus to adapt to humans. Diagnosis of Lassa fever has also advanced from basic serological tests to more sophisticated methods such as quantitative real time polymerase chain reaction (qRT-PCR) and sequencing, which are particularly useful for identifying outbreak strains. Several vaccines, including recombinant vesicular stomatitis virus (rVSV), virus-like particle (VLP), and DNA-based vaccines, have shown promise in animal models and some have progressed to phase 2 clinical trials. Preventing and controlling Lassa fever is critical to safeguard the health and well-being of affected communities. Effective measures such as rodent control, improved sanitation, and early detection and isolation of infected individuals are essential for reducing transmission. Ongoing research into the genetic and ecological factors that drive the evolution of Lassa virus is necessary to reduce the impacts of Lassa fever.

A review of the recent advances on Lassa fever with special reference to molecular epidemiology and progress in vaccine development

Lassa fever, a viral hemorrhagic fever caused by the Lassa virus (LASV), is endemic in West Africa and is associated with high morbidity and mortality. At least three of the four proposed seven lineages of LASV are found in Nigeria, where the multimammate rat, Mastomys natalensis, serves as the primary reservoir. Endemic countries report approximately 200,000 infections and 5,000 deaths annually, with Nigeria experiencing thousands of infections and hundreds of deaths including healthcare workers. The aim of this review is to provide scientific information for better understanding of the evolutionary biology, molecular epidemiology, pathogenesis, diagnosis, and prevention of Lassa fever in Nigeria and other endemic regions worldwide, which can lead to improved control efforts and reduce morbidity and mortality from recurrent epidemics. To achieve this aim, observational studies such as case series, cross-sectional and cohort studies published between December 2017 and September 2022 were searched for on various online databases including Google Scholar, Africa Journals Online (AJOL), Research Gates, PubMed, PMIC, NCDC, and WHO websites. Although the origin and evolutionary history, and the transmission dynamics of Lassa virus have been revealed through recent molecular epidemiological studies, the factors that drive the evolution of the virus remain unclear. Genetic changes in the viral genome may have enabled the virus to adapt to humans. Diagnosis of Lassa fever has also advanced from basic serological tests to more sophisticated methods such as quantitative real time polymerase chain reaction (qRT-PCR) and sequencing, which are particularly useful for identifying outbreak strains. Several vaccines, including recombinant vesicular stomatitis virus (rVSV), virus-like particle (VLP), and DNA-based vaccines, have shown promise in animal models and some have progressed to phase 2 clinical trials. Preventing and controlling Lassa fever is critical to safeguard the health and well-being of affected communities. Effective measures such as rodent control, improved sanitation, and early detection and isolation of infected individuals are essential for reducing transmission. Ongoing research into the genetic and ecological factors that drive the evolution of Lassa virus is necessary to reduce the impacts of Lassa fever

La fièvre de Lassa, une fièvre hémorragique virale causée par le virus de Lassa (LASV), est endémique en Afrique de l'Ouest et est associée à une morbidité et une mortalité élevées. Au moins trois des quatre lignées proposées de LASV se trouvent au Nigeria, où le rat multimammaire, Mastomys natalensis, sert de réservoir principal. Les pays endémiques signalent environ 200,000 infections et 5,000 décès par an, le Nigéria connaissant des milliers d'infections et des centaines de décès, y compris des travailleurs de la santé. L'objectif de cette revue est de fournir des informations scientifiques pour une meilleure compréhension de la biologie évolutive, de l'épidémiologie moléculaire, de la pathogenèse, du diagnostic et de la prévention de la fièvre de Lassa au Nigeria et dans d'autres régions endémiques du monde, ce qui peut conduire à des efforts de contrôle améliorés et réduire la morbidité et la mortalité des épidémies récurrentes. Pour atteindre cet objectif, des études observationnelles telles que des séries de cas, des études transversales et de cohorte publiées entre décembre 2017 et septembre 2022 ont été recherchées sur diverses bases de données en ligne, notamment Google Scholar, Africa Journals Online (AJOL), Research Gate, PubMed, PMIC, Sites Web du NCDC et de l'OMS. Bien que l'origine et l'histoire évolutive, ainsi que la dynamique de transmission du virus de Lassa aient été révélées par des études épidémiologiques moléculaires récentes, les facteurs qui déterminent l'évolution du virus restent flous. Des modifications génétiques du génome viral pourraient avoir permis au virus de s'adapter à l'homme. Le diagnostic de la fièvre de Lassa est également passé des tests sérologiques de base à des méthodes plus sophistiquées telles que la réaction quantitative en chaîne par polymérase en temps réel (qRTPCR) et le séquençage, qui sont particulièrement utiles pour identifier les souches épidémiques. Plusieurs vaccins, y compris le virus recombinant de la stomatite vésiculeuse (rVSV), les particules pseudo-virales (VLP) et les vaccins à base d'ADN, se sont révélés prometteurs dans des modèles animaux et certains ont progressé vers des essais cliniques de phase 2. La prévention et le contrôle de la fièvre de Lassa sont essentiels pour préserver la santé et le bien-être des communautés touchées. Des mesures efficaces telles que le contrôle des rongeurs, l'amélioration de l'assainissement et la détection et l'isolement précoces des personnes infectées sont essentielles pour réduire la transmission. Des recherches continues sur les facteurs génétiques et écologiques qui déterminent l'évolution du virus de Lassa sont nécessaires pour réduire les impacts de la fièvre de Lassa.

Implicaciones de la precipitación sobre la evolución del tamaño corporal y distancia interaxilar en el complejo Aspidoscelis gularis (Squamata: Teiidae) / Rainfall implications on body size evolution of Aspidoscelis gularis (Squamata: Teiidae)

ResumenLas historias de vida son atributos altamente variables que maximizan la adecuación de los organismos. Se ha documentado la relación del peso y el tamaño corporal sobre estos atributos, los cuales además estan influidos por variaciones ambientales y la heterogeneidad del hábitat. El tamaño y forma corporal son considerados atributos de historia de vida, los cuales estan principalmente asociados a la precipitación que promueve la cantidad de recursos disponibles en el ambiente. En el género Aspidoscelis el tamaño y masa relativa de la nidada estan asociados principalmente a la latitud y altitud. En Aspidoscelis gularis la precipitación de invierno favorece dos temporadas reproductoras, lo que determina que el tamaño de nidada sea variable en cada puesta. Las muestras fueron tomadas de mayo-julio 2013 y mayo-septiembre 2015. Se obtuvieron un total de 65 individuos de los cuales se tomaron medidas de longitud del cuerpo y distancia interaxilar, así como muestras de tejido hepático para la extracción de ADN y obtener las relaciones filogenéticas con respecto a un análisis de Inferencia Bayesiana para posteriormente aplicar los Métodos Comparados Filogenéticos como señal filogenética, contrastes filogenéticamente independientes y la reconstrucción del carácter ancestral. Por lo tanto, nuestros resultados muestran que en el tamaño y forma del cuerpo existe poca señal filogenética, en tanto que los contrastes filogenéticamente independientes y la reconstrucción del carácter ancestral sugieren que los tamaños corporales pequeños están asociadas a localidades con mayor cantidad de precipitación, lo que puede estar relacionado con un establecimiento de la madurez sexual temprana lo cual es el reflejo de la talla máxima de los adultos. Además, de acuerdo a un ANOVA y un ANCOVA hubo diferencias estadísticamente significativas en el tamaño y forma corporal respectivamente, lo que promueve un sistema para la competencia sexual para machos y un sistema para la fecundidad en hembras. Estos resultados son importantes para determinar el efecto de la precipitación sobre algunas características de historia de vida, lo que indica que las lagartijas del complejo sureste del complejo A. gularis son capaces de enfrentar diferentes presiones de selección, impuestas por el ambiente.

AbstractLife history traits are highly variable attributes that maximize organisms's fitness. The relationship of weight and body size with environmental changes and habitat heterogeneity has been documented in previous reports; and size and body shapes are both considered life history attributes that are associated with rainfall, that boost available resources in the environment. While in Aspidoscelis genus, clutch size and relative mass are mainly associated with latitude and altitude, in Aspidoscelis gularis, winter rainfall favors two reproductive seasons, which may determine season variable clutch size. With the aim to study this, samplings were undertaken from May-July 2013, and May-September 2015. A total of 65 individuals lizards of the Southeast clade were obtained, and body length and interaxilar distance measurements were taken; furthermore, hepatic tissue samples were taken for DNA extraction, which allowed us to analyze phylogenetic relationships through a Bayesian Inference analysis, and subsequently, to apply Phylogenetic Comparative Methods (like phylogenetic signal, phylogenetically independent contrasts and reconstruction of ancestral character). Our results showed that there is a low phylogenetic signal regarding body size and shape, while the phylogenetically independent contrasts and reconstruction of ancestral characters suggest that small body sizes are associated to locations with highest rainfall. This can be associated to an establishment of an early sexual maturity, which reflects the maximum size of adults. Furthermore, according to an ANOVA and ANCOVA, there were statistically significant differences in body size and shape respectively, which promote a system for sexual competition for males and a system for fertility in females. These results were important to determine the effect of rainfall on some life history traits, pointing out that lizards of the Southeast clade, belonging to the A. gularis complex were able to face different selection pressures, determined by the environment.

Evolutionary and Comparative Genomics to Drive Rational Drug Design, with Particular Focus on Neuropeptide Seven-Transmembrane Receptors

Seven transmembrane receptors (7TMRs), also known as G protein-coupled receptors, are popular targets of drug development, particularly 7TMR systems that are activated by peptide ligands. Although many pharmaceutical drugs have been discovered via conventional bulk analysis techniques the increasing availability of structural and evolutionary data are facilitating change to rational, targeted drug design. This article discusses the appeal of neuropeptide-7TMR systems as drug targets and provides an overview of concepts in the evolution of vertebrate genomes and gene families. Subsequently, methods that use evolutionary concepts and comparative analysis techniques to aid in gene discovery, gene function identification, and novel drug design are provided along with case study examples.

Evolution of Rodent Pheromones: A Review of the ABPs with Comparison to the ESPs and the MUPs.

Three proteinaceous pheromone families, the androgen-binding proteins (ABPs), the exocrine-gland secreting peptides (ESPs) and the major urinary proteins (MUPs) are encoded by large gene families in the Mus musculus and Rattus norvegicus genomes. The purpose of this article is to review what is known about the evolutionary histories of the the Abp gene family expansions in rodents and, where appropriate, to compare them to what is known of the expansions of the Mup and Esp gene families. The issues important to these histories are the extent of the gene family expansions, the timing of their expansions and the roles played by selection, gene conversion and non-allelic homologous recombination (NAHR). I also compare and contrast the evolutionary histories of all three mouse gene families in light of the proposed functions of their pheromones in mouse communication.

Short-tandem repeat analysis in seven Chinese regional populations

In the present study, we investigated the application of 13 short tandem repeat (STR) loci (D13S317, D7S820, TH01, D16S539, CSFIPO, VWA, D8S1179, TPOX, FGA, D3S1358, D21S11, D18S51 and D5S818) routinely used in forensic analysis, for delineating population relationships among seven human populations representing the two major geographic groups, namely the southern and northern Chinese. The resulting single topology revealed pronounced geographic and population partitioning, consistent with the differences in geographic location, languages and eating habits. These findings suggest that forensic STR loci might be particularly powerful tools in providing the necessary fine resolution for reconstructing recent human evolutionary history.