Biomarcadores enzimáticos e histológicos em brânquias de Ucides cordatus (Linnaeus, 1763) (Crustacea, Brachyura, Ucididae) indicativos de impactos ambientais em uma região portuária do nordeste do Brasil / [Enzymatic and histological biomarkers in Ucides cordatus (Linnaeus, 1763) (Crustacea, Brachyura, Ucididae) gills indicative of environmental impacts in a port region of northeastern Brazil]

Objetivou-se neste estudo analisar biomarcadores histológicos e bioquímicos em brânquias de U. cordatus indicativos de impactos na Baía de São Marcos. Caranguejos foram coletados em quatro áreas na Baía de São Marcos: A1= Ilha dos Caranguejos (com baixo impacto); A2= Coqueiro, A3= Porto Grande, A4= Cajueiro (áreas potencialmente impactadas). Mediram-se os dados biométricos de cada exemplar de caranguejo. Amostras de brânquias foram submetidas à técnica histológica padrão e homogeneizadas em tampão fosfato, e o sobrenadante foi utilizado para análise das enzimas glutationa-S-transferase (GST) e catalase (CAT). A biometria indicou que os caranguejos de A1 são significativamente (P<0,05) maiores e mais pesados do que os caranguejos das áreas A2, A3 e A4. As alterações branquiais (rompimento das células pilastras, deformação do canal marginal, deslocamento da cutícula e necrose) foram significativamente (P˂0,05) mais frequentes em caranguejos de A2, A3 e A4 do que nos caranguejos de A1. As atividades enzimáticas da GST e CAT nos caranguejos apresentaram diferença significativa (P<0,05) entre as áreas de coletas, com padrão similar ao observado para as alterações branquiais. Os biomarcadores analisados mostraram que os caranguejos estão sob diferentes níveis de impactos (A4>A3>A2>A1) ao longo da Baía de São Marcos.(AU)

The objective of this study was to analyze histological and biochemical biomarkers in U. cordatus gills indicative of impacts in São Marcos Bay. Crabs were collected from four areas in São Marcos Bay: A1=Ilha dos Caranguejos (with low impact); A2=Coqueiro, A3=Porto Grande, A4=Cajueiro (potentially impacted areas). The biometric data of each specimen was measured. Gill samples were submitted to standard histological technique and homogenized in phosphate buffer, and the supernatant was used for analysis of glutathione S-transferase (GST) and catalase (CAT) enzyme activity. Biometric data indicated that crabs found in A1 are significantly (P<0.05) larger and heavier than crabs found in A2, A3 and A4 areas. Gill alterations (rupture of pilaster cells, Dilation of the marginal channel, Cuticle Rupture and necrosis) were significantly (P˂0.05) more frequent in the crabs in A2, A3 and A4 than crabs in A1. The enzymatic activities of GST and CAT showed significant difference (P<0.05) between the sampling areas, similar to that observed for gill alterations. The biomarkers analyzed showed that the crabs are under different impact levels (A4> A3> A2> A1) along the São Marcos Bay.(AU)

Biology of Corythucha gossypii Fabricius, 1794 (Hemiptera: Tingidae) in Ricinus communis at different temperatures and thermal requirements / Biologia de Corythucha gossypii Fabricius, 1794 (Hemiptera: Tingidae) em Ricinus communis em diferentes temperaturas e exigências térmicas

Abstract We studied the biology of Corythucha gossypii in Ricinus communis under different temperatures in climatic chambers adjusted at 20, 23, 25, and 28 °C, 60 ± 10% relative humidity, and a 12-h photoperiod. The development period and viability of eggs, the development period and survival rate of nymphs, and egg-adult cycle of C. gossypii as well as the adult longevity and fecundity were estimated. The thermal requirements (K) and temperature-base (Tb) were estimated for each of the immature stages and for the eggs-adults period. The duration of the eggs and nymphs phases and the egg-adult cycle of the C. gossypii on castor bean leaves at 20-28 °C were 7.6-17 days, 10.2-27.5 days, and 16.9-44.5 days, respectively. The lower temperature inhibited the oviposition of C. gossypii, whereas the higher temperatures were most favorable for its development. The municipalities of the Bahia state of Brumado, Irecê, Itaberaba, Jacobina, and Senhor do Bonfim were estimated to have a high potential for the population growth of C. gossypii. However, a greater number of generations per year of C. gossypii were observed in the municipalities of Brumado and Itaberaba.

Resumo Estudamos a biologia de Corythucha gossypii em Ricinus communis sob diferentes temperaturas em câmaras climatizadas ajustadas as temperaturas de 20, 23, 25 e 28 °C, umidade relativa de 60 ± 10% e fotoperíodo de 12 horas. O período de desenvolvimento e a viabilidade dos ovos, o período de desenvolvimento e a taxa de sobrevivência de ninfas e do ciclo de ovo-adulto de C. gossypii, bem como a longevidade dos adultos e fecundidade foram estimados. As exigências térmicas (K) e as temperaturas-bases (Tb) foram estimadas para cada um dos estádios imaturos e para o ciclo de ovo-adulto. A duração das fases de ovos e ninfas e do ciclo de ovo a adulto de C. gossypii em folhas de mamona a 20-28 °C foram de 7,6-17 dias, 10,2-27,5 dias e 16,9-44,5 dias, respectivamente. A temperatura mais baixa inibiu a oviposição de C. gossypii , enquanto as temperaturas mais altas foram favoráveis ao seu desenvolvimento. Os municípios do estado da Bahia de Brumado, Irecê, Itaberaba, Jacobina e Senhor do Bonfim foram estimados para ter um alto potencial para o crescimento populacional de C. gossypii. No entanto, o maior número de gerações por ano de C. gossypii foi observado nos municípios de Brumado e Itaberaba.

Sting_RDB: a relational database of structural parameters for protein analysis with support for data warehousing and data mining

An effective strategy for managing protein databases is to provide mechanisms to transform raw data into consistent, accurate and reliable information. Such mechanisms will greatly reduce operational inefficiencies and improve one’s ability to better handle scientific objectives and interpret the research results. To achieve this challenging goal for the STING project, we introduce Sting_RDB, a relational database of structural parameters for protein analysis with support for data warehousing and data mining. In this article, we highlight the main features of Sting_RDB and show how a user can explore it for efficient and biologically relevant queries. Considering its importance for molecular biologists, effort has been made to advance Sting_RDB toward data quality assessment. To the best of our knowledge, Sting_RDB is one of the most comprehensive data repositories for protein analysis, now also capable of providing its users with a data quality indicator. This paper differs from our previous study in many aspects. First, we introduce Sting_RDB, a relational database with mechanisms for efficient and relevant queries using SQL. Sting_rdb evolved from the earlier, text (flat file)-based database, in which data consistency and integrity was not guaranteed. Second, we provide support for data warehousing and mining. Third, the data quality indicator was introduced. Finally and probably most importantly, complex queries that could not be posed on a text-based database, are now easily implemented. Further details are accessible at the Sting_RDB demo web page: http://www.cbi.cnptia.embrapa.br/StingRDB.

Predicting enzyme class from protein structure using Bayesian classification

Predicting enzyme class from protein structure parameters is a challenging problem in protein analysis. We developed a method to predict enzyme class that combines the strengths of statistical and data-mining methods. This method has a strong mathematical foundation and is simple to implement, achieving an accuracy of 45%. A comparison with the methods found in the literature designed to predict enzyme class showed that our method outperforms the existing methods.

Building multiple sequence alignments with a flavor of HSSP alignments

Homology-derived secondary structure of proteins (HSSP) is a well-known database of multiple sequence alignments (MSAs) which merges information of protein sequences and their three-dimensional structures. It is available for all proteins whose structure is deposited in the PDB. It is also used by STING and (Java)Protein Dossier to calculate and present relative entropy as a measure of the degree of conservation for each residue of proteins whose structure has been solved and deposited in the PDB. However, if the STING and (Java)Protein Dossier are to provide support for analysis of protein structures modeled in computers or being experimentally solved but not yet deposited in the PDB, then we need a new method for building alignments having a flavor of HSSP alignments (myMSAr). The present study describes a new method and its corresponding databank (SH2QS--database of sequences homologue to the query [structure-having] sequence). Our main interest in making myMSAr was to measure the degree of residue conservation for a given query sequence, regardless of whether it has a corresponding structure deposited in the PDB. In this study, we compare the measurement of residue conservation provided by corresponding alignments produced by HSSP and SH2QS. As a case study, we also present two biologically relevant examples, the first one highlighting the equivalence of analysis of the degree of residue conservation by using HSSP or SH2QS alignments, and the second one presenting the degree of residue conservation for a structure modeled in a computer, which , as a consequence, does not have an alignment reported by HSSP.

The Star STING server: a multiplatform environment for protein structure analysis

Star STING is the latest version of the STING suite of programs and corresponding database. We report on five important aspects of this package that have acquired some new characteristics, designed to add key advantages to the whole suite: 1) availability for most popular platforms and browsers, 2) introduction of the STING_DB quality assessment, 3) improvement in algorithms for calculation of three STING parameters, 4) introduction of five new STING modules, and 5) expansion of the existing modules. Star STING is freely accessible at: http://sms.cbi.cnptia.embrapa.br/SMS/, http://trantor.bioc.columbia.edu/SMS, http://www.es.embnet.org/SMS/, http://gibk26.bse.kyutech.ac.jp/SMS/ and http://www.ar.embnet.org/SMS.

PDB-Metrics: a web tool for exploring the PDB contents

PDB-Metrics (http://sms.cbi.cnptia.embrapa.br/SMS/pdb_metrics/index.html) is a component of the Diamond STING suite of programs for the analysis of protein sequence, structure and function. It summarizes the characteristics of the collection of protein structure descriptions deposited in the Protein Data Bank (PDB) and provides a Web interface to search and browse the PDB, using a variety of alternative criteria. PDB-Metrics is a powerful tool for bioinformaticians to examine the data span in the PDB from several perspectives. Although other Web sites offer some similar resources to explore the PDB contents, PDB-Metrics is among those with the most complete set of such facilities, integrated into a single Web site. This program has been developed using SQLite, a C library that provides all the query facilities of a database management system

Acurácia do exame citológico no diagnóstico de processos inflamatórios e proliferativos dos animais domésticos / Accuracy of cytological exam for diagnosis of inflammatory and proliferative process in domestic animals

The purpose of this study was to demonstrate the importance and accuracy of cytology as a diagnostic method for proliferative and inflammatory processes in domestic animals. The cytology samples were collected by biopsy or during necropsy, using fine needle aspiration or imprint techniques in 80 dogs, 4 cats, 3 goats, 2 cows and 1 horse. Histopathology of formalin fixed tissues processed by the routine embedding paraffin technique was used as a confirmatory diagnostic test. Cytology results agreed with histopathological findings in 75 (83.3 per cent) cases. They held higher accord in round cell tumor cases. Therefore, this study shows that cytology is a valuable diagnostic method for diagnosis of proliferative process in domestic animals, especially for round cells tumors

Protocolo para exame de amostras citológicas obtidas através de punçäo aspirativa com agulha fina de tumores mamários em cäes / Protocol for the examination of cytologic specimens obtained by fine needle aspiration biopsy (FNAB) of canine breast tumors

No Hospital da Escola de Veterinária da Universidade Federal de Minas Gerais foi desenvolvido um protocolo para exame citopatológico para amostras obtidas pelo método de punçäo aspirativa com agulha fina de tumores de mama em cäes. O protocolo é divido em duas partes: requisiçäo e laudo citopatológico. A requisiçäo é dividida em histórico e exame clínicos. O laudo citopatológico contem campos para descrever o padräo celular e o diagnóstico. O protocolo incorpora todos os dados clínicos e citopatológicos básicos para o diagnóstico prognóstico e importantes para o tratamento de cäes com tumor de mama. O objetivo deste protocolo e servir como base para protocolos de pesquisa, ou como guia para outros tipos de sinopses ou laudos

Consideraçöes básicas sobre o isoflurano / Isoflurane

O isoflurano é um anestésico volátil halogenado näo inflamável nem explosivo que pode ser usado em qualquer sistema de anestesia. O seu coeficiente de partilha sangue/gás permite tempo curto de induçäo (embora o odor pungente seja uma desvantagem neste sentido) e rápida regressäo da anestesia. A CAM do isoflurano fica a meia distância entre a do halotano e a do enflurano. Ele deprime a ventilaçäo porém menos do que halotano e o enflurano. Diminui o volume corrente e aumenta a freüência respiratória. A mais marcante característica do isoflurano em relaçäo ao aparelho cardiovascular é a estabilidade conferida ao ritmo cardíaco, mesmo em presença de catecolaminas nas doses recomendadas para uso clínico. Ele diminui a pressäo arterial sistêmica principalmente por induzir a resistência periférica total e aumenta a freqüência cardíaca. O isoflurano reduz o consumo de oxigênio pelo miocárdio mas a "perfusäo luxuriosa" pode estar presente nos coronariopatas. A vasodilataçäo produzida pelo isoflurano aumenta o fluxo sangüíneo cerebral e a pressäo intracaniana. O isoflurano näo produz atividade convulsivante a nível cerebral mas há relato de caso em que crises convulsivas foram observadas na induçäo da anestesia. O isoflurano deprime a transmissäo neuromuscular e a contratilidade da musculatura esquéletica e produz relaxamento muscular adequado para os procedimentos cirúrgicos com uso mínimo ou nenhum de relaxantes näo-despolarizantes. O isoflurano também deprime o miométro podendo aumentar a perda sangüínea. A biotransformaçäo do isoflurano é mínima de modo que seu potencial para provocar dano renal ou hepático é muito baixo. O isoflurano näo demostrou possuir propriedades teratogênicas, mutagênicas ou carcinogênicas e näo deprime a funçäo microbicida dos leucócitos