Internal Transcribed Spacer (ITS) regions: A powerful tool for analysis of the diversity of wheat genotypes

Wheat is a widely cultivated crop and it is one of the major food sources worldwide. Among the various tools used to study diversity of wheat species, the internal transcribed spacer (ITS) assessment emerges to be the more appropriate approach. In the present study, we evaluated 15 genotypes of Iranian wheat cultivars (wild, native, and breed) using ITS gene sequences. Similarity matrices and dendrogram of phylogenic relationship were constructed using Mega ver6 software. We report the major nucleotide changes in the same position between diploid and hexaploid species. dN/dS ratio for diploid, tetraploid, and hexaploid species indicated a pure selection in the examined gene, with no key changes in the genes, and 91% ITS diversity within individual wheat was evident. The results suggest that as evolution moves forward, nucleotide changes are reduced so that only a few changes in nucleotides occur. ITS marker can distinguish different wheat genotypes at the genomic level and thus prove to be the most appropriate assessment tool for analyzing inter and intra-species relationships.

Evaluation of drought tolerance indices for barley landraces under irrigated and dry conditions / Avaliação de índices de tolerância seca para terraços de cevada em condições irrigadas e secas

Barley cultivation for drought areas requires a reliable assessment of drought tolerance variability among the breeding germplasms. Hence, 121 barley landraces, advanced breeding lines, and varieties were evaluated under both moisture non-stress and stress field conditions using a lattice square (11×11) design with two replications for each set of the trials. Twelve drought tolerance indices (SSI, TOL, MP, GMP, STI, YI, YSI, HM, SDI, DI, RDI, and SSPI) were used based on grain yield under normal (Yp) and drought (Ys) conditions. Analysis of variance showed a significant genetic variation among genotypes for all indices except for TOL and SSPI indices. Yp had a very strong association with Ys (r = 0.92**) that indicates high yield potential under non-stress can predict better yield under stress conditions. Yp and Ys were positively and significantly correlated with MP, GMP, STI, YI, HM, and DI indices, whereas they were negatively correlated with SSI and SDI. In principal component analysis (PCA), the first PC explained 64% of total variation with Yp, Ys, MP, GMP, STI, YI, HM, and DI. The second PC explained 35.6% of the total variation and had a positive correlation with SSI, TOL, SDI, and SSPI. It can be concluded that MP, GMP, STI, YI, HM and DI indices with the most positive and significant correlation with the yield at both non-stress and stress environments would be better indices to screen barley genotypes, although none of the indices could undoubtedly identify high yield genotypes under both conditions.

O cultivo de cevada para áreas secas exige uma avaliação confiável da variabilidade da tolerância à seca entre os germoplasmas reprodutores. Assim, 121 linhagens crioulas de cevada (linhas de reprodução avançada e variedades) foram avaliadas em campo sob condições sem estresse e com estresse de umidade do solo, utilizando-se para isso um arranjo experimental de malha quadrada (11×11), com duas repetições para cada conjunto de ensaios. Foram utilizados 12 índices de tolerância à seca (SSI, TOL, MP, GMP, STI, YI, YSI, HM, SDI, DI, RDI e SSPI), com base no rendimento de grãos sob condições normais sem estresse (Yp) e com estresse de seca (Ys). A análise de variância mostrou uma variação genética significativa entre os genótipos para todos os índices, com exceção dos índices TOL e SSPI. Yp teve uma associação muito forte com Ys (r = 0,92**), o que indica que o potencial de alto rendimento sob condições sem estresse pode prever melhor rendimento sob condições de estresse. Yp e Ys foram positivamente e significativamente correlacionados com os índices MP, GMP, STI, YI, HM e DI, enquanto, foram correlacionados negativamente com os índices SSI e SDI. Na análise de componentes principais (PCA), o primeiro PC explicou 64% da variação total com Yp, Ys, MP, GMP, STI, YI, HM e DI. O segundo PC explicou 35,6% da variação total e apresentou correlação positiva com SSI, TOL, SDI e SSPI. Pode-se concluir que, os índices MP, GMP, STI, YI, HM e DI com a correlação mais positiva e significativa com a produção nos ambientes sem estresse e com estresse seriam melhores índices para a seleção de genótipos de cevada, embora nenhum dos índices pudesse concretamente identificar genótipos de alto rendimento sob ambas as condições.