Genetic Diversity of the Pear Scab Fungus Venturia nashicola in Korea

Scab disease caused by Venturia nashicola is of agroeconomic importance in cultivation of Asian pear. However, little is known about the degree of genetic diversity in the populations of this pathogen. In this study, we collected 55 isolates from pear scab lesions in 13 major cultivation areas in Korea and examined the diversity using sequences of internal transcribed spacer (ITS) region, β-tubulin (TUB2), and translation elongation factor-1α (TEF-1α) genes as molecular markers. Despite a low level of overall sequence variation, we found three distinctive subgroups from phylogenetic analysis of combined ITS, TUB2, and TEF-1α sequences. Among the three subgroups, subgroup 1 (60% of isolates collected) was predominant compared to subgroup 2 (23.6%) or subgroup 3 (16.4%) and was distributed throughout Korea. To understand the genetic diversity among the subgroups, RAPD analysis was performed. The isolates yielded highly diverse amplicon patterns and none of the defined subgroups within the dendrogram were supported by bootstrap values greater than 30%. Moreover, there is no significant correlation between the geographical distribution and the subgroups defined by molecular phylogeny. Our data suggest a low level of genetic diversification among the populations of V. nashicola in Korea.

Nucleic Acid Extraction for the Quantification of Cytomegalovirus and Epstein-Barr Virus

BACKGROUND: Availability of an international standard will improve the standardization of quantitative PCR (qPCR) for cytomegalovirus (CMV) and Epstein-Barr virus (EBV); however, nucleic acid extraction methods may affect qPCR results. This study was designed to determine whether routine measurement of DNA concentration and purity is required in qPCR for CMV and EBV. In addition, the performance of the automated QIASymphony DSP DNA Mini kit (Qiagen, USA) and the manual QIAamp DNA Blood Mini kit (Qiagen) in extracting DNA from whole blood samples was compared. METHODS: The concentration and purity of 300 extracted DNA samples were determined using a NanoDrop ND-1000 spectrophotometer (Thermo Scientific, USA). A total of 72 and 54 whole blood samples were tested by artus CMV and EBV qPCR (Qiagen), respectively. RESULTS: No correlation was found between DNA concentration and EBV DNA load or between DNA purity and the PCR inhibition measured by ΔCq (the difference between internal control Cq of the sample and that of the negative control). Quantification of CMV and EBV DNA using the two extraction methods showed highly similar results (rho=0.946 and 0.887, respectively). Of the 29 specimens that yielded CMV DNA by both methods, however, 8 specimens (27.6%) yielded higher CMV DNA loads with QIASymphony. CONCLUSIONS: Routine measurement of DNA concentration and purity is not necessary for qPCR of CMV and EBV. The automated QIASymphony outperformed the manual QIAamp Blood Mini kit in extracting CMV and EBV DNA from whole blood samples.

The Lichen Genus Sticta in South Korea

Sticta (Schreber.) Ach. is one of the common lichen genera in tropical and subtropical regions, but not in the Korean Peninsula. For almost two decades, no detailed taxonomic or revisionary study has been done on this genus. This study was based on the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and the samples were identified on the basis of recent literature. In this revisionary study, a total of eight species of Sticta, including a newly recorded one are documented. These species include Sticta fuliginosa (Dicks.) Ach., Sticta gracilis (Mull. Arg.) Zahlbr., Sticta limbata (Sm.) Ach., Sticta nylanderiana Zahlbr., Sticta sublimbata (J. Steiner) Swinscow & Krog, Sticta weigelii (Ach.) Vain., Sticta wrightii Tuck., and Sticta yatabeana Mull. Arg. Detailed descriptions of S. nylanderiana, S. sublimbata, S. weigelii, and S. yatabeana with their morphological, anatomical, and chemical characteristics are provided. A key description of all known Sticta species of the Korean Peninsula is also presented.

Coffee Consumption and Bone Mineral Density in Korean Premenopausal Women / 가정의학회지

BACKGROUND: Although Asian people are known to have lower bone mass than that of Caucasians, little is known about coffee-associated bone health in Asian. This study aimed to assess the relationship between coffee consumption and bone mineral density (BMD) in Korean premenopausal women. METHODS: Data were obtained from the Fourth Korea National Health and Nutrition Examination Survey 2008-2009. The study population consisted of 1,761 Korean premenopausal women (mean age 36 years) who were measured for lumbar spine and femoral neck BMD and who completed a standardized questionnaire about coffee intake frequency. We excluded the participants who took hormone replacement therapy or medication for osteoporosis. The cross-sectional relationship between coffee consumption and impaired bone health (osteopenia or osteoporosis) was investigated by bone densitometry. RESULTS: Coffee consumption showed no significant association with BMD of either femoral neck or lumbar spine, independent of other factors. The adjusted odds ratios for BMD for those who consumed once in a day, twice a day and three times a day were 0.94 (0.70-1.26), 0.93 (0.67-1.28), and 1.02 (0.69-1.50), respectively (P for trend = 0.927). CONCLUSION: This study does not support the idea that coffee is a risk factor for impaired bone health in Korean premenopausal women.

The Lichen Genus Parmotrema in South Korea

Parmotrema A. Massal. is a common lichen genus scattered throughout the Korean Peninsula; however, no detailed taxonomic or revisionary study of this genus has been conducted for nearly two decades. Therefore, this study revised the taxonomy of this genus based on specimens deposited in the lichen herbarium at the Korean Lichen Research Institute and samples wereidentified using recent literature. In this revisionary study, a total of eighteen species of Parmotrema including eight new records [Parmotrema cetratum (Ach.) Hale, Parmotrema cristiferum (Taylor) Hale, Parmotrema grayanum (Hue) Hale, Parmotrema defectum (Hale) Hale, Parmotrema dilatatum (Vain.) Hale, Parmotrema margaritatum (Hue) Hale, Parmotrema pseudocrinitum (Abbayes) Hale, and Parmotrema subsumptum (Nyl.) Hale] are documented. Detailed descriptions of each species with their morphological, anatomical and chemical characteristics are also given and a key to the known Parmotrema species of the Korean Peninsula is presented.

Leiorreuma exaltatum and Trapelia coarctata, New to Korean Lichen Flora

The present account briefly describes two crustose lichen species new to South Korea. Detailed taxonomic descriptions of Leiorreuma exaltatum and Trapelia coarctata, supported by distribution, ecology and illustrations, are provided. Both species were collected from warm-temperate, humid forests of Jeju Island.

Lichen Mycota in South Korea: The Genus Usnea

Usnea Adans. is a somewhat rare lichen in South Korea, and, in nearly two decades, no detailed taxonomic or revisionary study has been conducted. This study was based on the specimens deposited in the lichen herbarium at the Korean Lichen Research Institute, and the samples were identified using information obtained from recent literature. In this study, a total of eight species of Usnea, including one new record, Usnea hakonensis Asahina, are documented. Detailed descriptions of each species with their morphological, anatomical, and chemical characteristics are provided. A key to all known Usnea species in South Korea is also presented.

Notes on the Lichen Genus Hypotrachyna (Parmeliaceae) from South Korea

Hypotrachyna (Vainio) Hale is a somewhat rare lichen genus found on the Korean Peninsula. Since it was first recorded more than two decades ago, no detailed taxonomic or revisionary study of the genus has been conducted. Thus, the present study was conducted to carry out a detailed taxonomic and revisionary study of Hypotrachyna in South Korea. This study was based on specimens deposited in the Korean Lichen Research Institute (KoLRI). Detailed taxonomic studies and a literature review confirmed the presence of seven species of Hypotrachyna from South Korea, including one new record, Hypotrachyna nodakensis (Asahina) Hale. Descriptions of each species with their morphological, anatomical and chemical characters together with a key to all known Hypotrachyna species are presented.

A Taxonomic Study of the Genus Myelochroa in South Korea

Myelochroa (Asahina) Elix & Hale is a common foliose lichen genus found on the Korean Peninsula. Since it was first recorded nearly two decades ago, no detailed taxonomic or revisionary study of the genus has been conducted. Thus, the current study was conducted to carry out a detailed taxonomic and revisionary study of Myelochroa in South Korea. This study was based on specimens deposited in the Korean Lichen Research Institute (KoLRI). Detailed taxonomic studies and a literature review confirmed the presence of twelve species of Myelochroa from S. Korea, including one new record, Myelochroa xantholepis (Mont. & Bosch) Elix & Hale. Descriptions of each species with their morphological, anatomical and chemical characters together with a key to all known Myelochroa species are presented.

Taxonomic Study of the Lichen Genus Lobaria in South Korea

Lobaria (Schreb.) Hoffm is a common foliose lichen genus found on the Korean Peninsula, yet until now, no revision study has been done on this genus. After careful examination of specimens deposited in the Korean Lichen Research Institute (KoLRI), nine distinct species of Lobaria were confirmed. Morphological characteristics such as the presence or absence of isidia, or whether or not the surface was ridged or smooth, and chemical characteristics such as the result of the medulla reaction were of significant importance in the differentiation of species. Here, we provided detailed descriptions together with a key to all the known Korean species.

Two New Records of the Lichen Genus Placynthiella Elenkin in South Korea

This study describes two new records of the lichen genus Placynthiella (P. hyporhoda and P. icmalea) from South Korea. A brief taxonomic description and comments are provided for the new records. An artificial key is also provided for known species of this genus in South Korea.

Three New Records of Lichen Genus Rhizocarpon from South Korea

The paper describes three new records of lichen genus Rhizocarpon (R. alpicola, R. grande and R. lavatum) from South Korea. Brief taxonomic description and comments are provided for the new records. An artificial key is also provided for known species of this genus in South Korea.

Further Additions to Lichen Genus Buellia De Not. in South Korea

The paper describes two new records of the lichen genus Buellia (B. badia and B. nashii) from South Korea. A detailed taxonomic description and comments are presented for both taxa. An updated key representing all Buellia species known from South Korea is also provided.

Identification of Sculptolumina japonica (Physciaceae) in South Korea

The paper describes identification of new microlichen (Sculptolumina japonica) in South Korea. A detailed taxonomic description and comments are presented for the taxa studied. Lichen genus Sculptolumina is reported for the first time for this country.

Notes on Lichen Genus Buellia De Not. (lichenized Ascomycetes) from South Korea

Based on a literature survey and assessment of the important features of lichen genus Buellia (spore shape and size, anatomy of the exciple as well as analysis of the lichen substances), the present paper describes four new records of B. maritima, B. polyspora, B. spuria and B. stellulata from South Korea. Among them, B. maritima and B. polyspora are firstly reported in East Asia including in China, the Korean Peninsula and Japan. Brief description of all the new records along with earlier described species placed under genus Amandinea and Hafellia are provided with their distribution and chemistry. A key to all the Buellia species reported so far from South Korea is also provided.

Notes on the Existence of Leucodecton desquamescens (Thelotremoid Graphidaceae) in South Korea

This study describes a new record of a thelotremoid lichen (Leucodecton desquamescens) from South Korea. The taxon is characterized by thick, bulging thallus with many calcium oxalate crystal inclusions; an immersed, round to irregular ascomata with free exciple, ellipsoid to +/- roundish submuriform, brown ascospores, and lack of secondary metabolites. A detailed taxonomic description and comments are presented for this taxon. The lichen genus Leucodecton is reported for the first time in South Korea.

Plant Hormones Promote Growth in Lichen-Forming Fungi

The effect of plant hormones on the growth of lichen-forming fungi (LFF) was evaluated. The use of 2,3,5-triiodobenzoic acid and indole-3-butyric acid resulted in a 99% and 57% increase in dry weight of the lichen-forming fungus Nephromopsis ornata. The results suggest that some plant hormones can be used as inducers or stimulators of LFF growth for large-scale culture.

New Record of the Existence of Sarcographa tricosa (Lichenized Ascomycota, Graphidaceace) in Korea

Lichen genus Sarcographa Fee, a stromatoid Graphidacean taxa, was newly found in Geomun Island, Jeonnam province. The lichen grew on the bark of Camellia japonica and Eurya emarginata along the coastal line of the island. It was identified as Sarcographa tricosa (Ach.) Mull. Arg. for the first time in Korea.

Taxonomic Study of Peltigera (Peltigeraceae, Ascomycota) in Korea

A taxonomic study of Peltigera in South Korea was performed. The phylogenetic analysis based on nr DNA internal transcribed spacer sequences suggests that Peltigera is a well-supported monophyletic group. Important characteristics are the phycobiont type of thallus and the vein type at the lower cortex (wide and flat, or narrow and ridged). The vertical or horizontal arrangement of the apothecia is also important in distinguishing species in this genus. Eleven species of Peltigera were revealed and confirmed, which included one new record, P. elisabethae. A description of each species is presented with morphological, anatomic, and chemical characteristics, and comparisons between similar species are made. A key to the species is also presented.

Notes on Some New Records of Macro- and Micro-lichens from Korea

The paper describes nine new records of macro- and micro-lichens from Korea. A brief taxonomic description and comments are presented for all the studied taxa (Catapyrenium squamellum, Chrysothrix candelaris, Endocarpon pallidulum, Endocarpon petrolepideum, Lecanora oreinoides, Leprocaulon albicans, Parmotrema saccatilobum, Verrucaria glaucina and Xanthoria parietina). The lichen genera Catapyrenium, Chrysothrix and Verrucaria are reported for the first time in this country.