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Genet. mol. res. (Online) ; 4(3): 590-598, 2005. tab, ilus
Artigo em Inglês | LILACS | ID: lil-444952

RESUMO

Interpro is a widely used tool for protein annotation in genome sequencing projects, demanding a large amount of computation and representing a huge time-consuming step. We present a strategy to execute programs using databases Pfam, PROSITE and ProDom of Interpro in a distributed environment using a Java-based messaging system. We developed a two-layer scheduling architecture of the distributed infrastructure. Then, we made experiments and analyzed the results. Our distributed system gave much better results than Interpro Pfam, PROSITE and ProDom running in a centralized platform. This approach seems to be appropriate and promising for highly demanding computational tools used for biological applications.


Assuntos
Humanos , Análise de Sequência de Proteína/métodos , Bases de Dados de Proteínas , Biologia Computacional/métodos , Projeto Genoma Humano , Sistemas de Gerenciamento de Base de Dados , Alinhamento de Sequência , Bases de Dados Factuais
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