Genotyping-by-sequencing based single nucleotide polymorphisms enabled Kompetitive Allele Specific PCR marker development in mutant Rubus genotypes

Background: Rubus is an economically important fruit crop across the globe. Recently, several Rubus mutant genotypes with improved agronomic traits have been developed using gamma ray irradiation. This study investigated genetic diversity and variations in Rubus mutant genotypes using single nucleotide polymorphism (SNP) markers generated from genotyping-by-sequencing (GBS) analysis. A GBS library of 14 Rubus genotypes, consisting of seven boysenberry mutant lines, four blackberry mutant lines, and three original varieties, were sequenced on the Illumina Hiseq2000 platform. A set of SNPs were analyzed by Kompetitive Allele Specific PCR (KASP) assay in order to discriminate the Rubus genotypes. Results: A total of 50,831,040 (86.4%) reads of clean data were generated, and the trimmed length ranged from 116,380,840 to 509,806,521 bp, with an average of 228,087,333 bp per line. A total of 19,634 high-quality SNPs were detected, which contained 11,328 homozygous SNPs and 8306 heterozygous SNPs. A set of 1504 SNPs was used to perform a phylogenetic analysis, which showed that there were clear differences among the Rubus genotypes based on their origin. A total of 25 SNPs were used for the KASP assays, of which six KASP primer sets were successfully distinguished among the Rubus genotypes. Conclusions: This study demonstrated that the SNP and KASP method is an economically efficient tool for mutant screening in Rubus breeding programs.

In vitro and cellular activities of the selected fruits residues for skin aging treatment

ABSTRACT Peel extracts of litchi and rambutan, and that of tamarind seed coat were investigated in relation to their utility in skin-aging treatments. Standardized extracts of tamarind were significantly (p < 0.05) more efficient at O2 •- scavenging (IC50 = 27.44 ± 0.09) than those of litchi and rambutan (IC50 = 29.57 ± 0.30 and 39.49 ± 0.52 μg/ml, respectively) and the quercetin standard (IC50 = 31.88 ± 0.15 μg/ml). Litchi extract proved significantly (p < 0.05) more effective for elastase and collagenase inhibition (88.29 ± 0.25% and 79.46 ± 0.92%, respectively) than tamarind (35.43 ± 0.68% and 57.69 ± 5.97%) or rambutan (31.08 ± 0.38% and 53.99 ± 6.18%). All extracts were safe to human skin fibroblasts and inhibit MMP-2, with litchi extract showing significantly (p < 0.01) enhanced inhibition over the standard, vitamin C (23.75 ± 2.74% and 10.42 ± 5.91% at 0.05 mg/ml, respectively). Extracts suppress melanin production in B16F10 melanoma cells through inhibition of tyrosinase and TRP-2, with litchi extract being the most potent, even more so than kojic acid (standard). These results highlight the potential for adding value to agro-industrial waste, as the basis for the sustainable production of innovative, safe, anti-aging cosmetic products.

Das Américas para o Mundo: origem, domesticação e dispersão do abacaxizeiro / From the Americas to the World: origin, domestication and dispersion of pineapple

O abacaxi (Ananas comosus (L.) Merril), fruto símbolo de regiões tropicais e subtropicais, originário das Américas, foi difundido para todo o mundo, principalmente pelos navegantes europeus, em razão de seu aroma e sabor característicos e exuberante aparência. Batizado como o "Rei das Frutas Coloniais", o abacaxi encontra-se entre as 11 frutas mais produzidas no mundo, sendo cultivada e consumida pelos cinco continentes, e o Brasil destaca-se como maior produtor. Assim, o objetivo desta revisão bibliográfica é abordar a história da cultura do abacaxi, contemplando sua botânica, sua origem e dispersão pelo mundo, seu cenário atual, também aspectos relacionados à conservação de germoplasma e ao melhoramento genético.

The pineapple(Ananas comosus (L.) Merril), fruit-symbol of tropical and subtropical regions, originated in the Americas, was widespread throughout the world mainly by european navigators because of its aroma and flavor, and lush appearance. Named as "King of Colonial Fruits", pineapple is one of the eleven most produced fruit in the world, growing consumed in every continent, with Brazil as the largest producer. Then, the objective of this literature review is to approach the pineapple history, contemplating its botany, origin and dispersion in the world and its current scenario and issues related to germplasm conservation and breeding.

Faunistic analysis of Anastrepha spp. (Diptera: Tephritidae) on a guava orchard under organic management in the municipality of Una, Bahia, Brazil / Análise faunística de Anastrepha spp. (Diptera: Tephritidae) em um pomar de goiaba sob manejo orgânico, no município de Una, BA

We carried out a study to characterize fruit fly populations on an organic guava orchard (Psidium guajava cv. Paluma) in the municipality of Una, southern region of the state of Bahia, Brazil, using faunistic analysis of the adult fruit fly specimens captured in McPhail traps from January 2004 through March 2007. A total of 22,673 specimens of Anastrepha (15,306 females and 7,367 males) were captured. Thirteen species of Anastrepha were recorded. A. fraterculus and A. obliqua were the more frequent and dominant species, accounting for 90.1 percent of all females captured in the traps. A. fraterculus was the predominant species (more frequent, constant and dominant). The high value of the Simpson index (0.62) and the low values of Shannon-Wiener (0.83) and equitability (0.49) indices indicated the dominance and high frequency of A. fraterculus and A. obliqua on the guava orchard despite the presence of other fruit species as potential hosts of fruit flies.

Foi realizado estudo para caracterizar as populações de moscas-das-frutas em pomar orgânico de goiaba (Psidium guajava cv. Paluma) no município de Una, Sul da Bahia, por meio da análise faunística dos espécimes capturados em armadilhas McPhail de janeiro de 2004 a março de 2007. Foram capturados 22.673 espécimes de Anastrepha (15.306 fêmeas e 7.367 machos). Treze espécies de Anastrepha foram registradas. A. fraterculus e A. obliqua foram as mais frequentes e dominantes, perfazendo 90,1 por cento de todos as fêmeas capturadas nas armadilhas. A. fraterculus foi a espécie predominante (mais frequente, constante e dominante). O alto valor do índice de Simpson (0,62) e os baixos valores dos índices de Shannon-Wiener (0,83) e equitabilidade (0,49) indicaram a dominância e a alta frequência de A. fraterculus e A. obliqua no pomar de goiaba, mesmo na presença de outras espécies frutíferas potencialmente hospedeiras de moscas-das-frutas.