Phylogeography of Paris poliphylla var. yunnanensis based on chloroplast gene trnL-trnF sequences / 中国中药杂志

Phylogeography is a research hotspot in the field of the genetic diversity and core germplasm construction of endangered rare plants. Paris polyphylla var. yunnanensis is a rare plant species mainly distributed in China. Wild individuals have been overexploited for the last few decades because of increasing demand for such medicines. Therefore, it is great significance to study the phylogeography of P. poliphylla var. yunnanensis based on chloroplast gene trnL-trnF sequences. In this study, chloroplast genes trnL-trnF were used in the phylogeography analysis of 15 wild and 17 cultivated populations of P. polyphylla var. yunnanensis. This study revealed that based on the results of neutrality tests and mismatch analysis, the rapid expansion of wild population has not been detected in P. polyphylla var. yunnanensis. After aligning and sorting the obtained cpDNA sequences, a total of 15 haplotypes were detected in all 32 populations. One haplotype was unique to the wild population, and 5 haplotypes were unique to the cultivated population. It can be seen that the haplotype richness of cultivated population was higher than that of wild population. The wild populations of P. polyphylla var. yunnanensis were divided into two groups according to evolutionary relationship of haplotypes and distribution map of haplotypes. The haplotype of branch Ⅰ was mainly distributed in Guizhou, and the haplotype of branch Ⅱ was located in Yunnan and Huidong, Sichuan. Therefore, it's speculated that Guizhou and the west Yunnan region may be glacial refuge in the evolutionary history of wild populations of P. polyphylla var. yunnanensis, and in order to protect the wild resources more effectively, wild populations of P. polyphylla var. yunnanensis in these two areas should be included in the protection zone.

African elephant genetics: enigmas and anomalies

During the last two decades, our understanding of the genetics of African elephant populations has greatly increased. Strong evidence, both morphological and genetic, supports recognition of two African elephant species: the savanna elephant (Loxodonta africana) and the forest elephant (L. cyclotis). Among elephantids, phylogeographic patterns for mitochondrial DNA are highly incongruent with those detected using nuclear DNA markers, and this incongruence is almost certainly due to strongly male-biased geneflow in elephants. As our understanding of elephant population genetics has grown, a number of observations may be considered enigmatic or anomalous. Here, several of theseare discussed. (i) There are a number of within-species morphological differences purported to exist among elephants in different geographic regions, which would be difficult to reconcile with the low genetic differentiation among populations. (ii) Forest elephants have a higher effective population size than savanna elephants, with nuclear genetic markersmuch more diverse in the forest elephants than savanna elephants,yet this finding would need to be reconciled with thelife history of the two species. (iii) The savanna and forest elephants hybridize and produce fertile offspring, yet full genome analysis of individuals distant from the hybrid zone suggests that gene flow has been effectively sterilized for atleast ∼500,000 years. (iv) There are unexplored potentialramifications of the unusual mito–nuclear patterns among elephants. These questions are considered in light of highmale and low female dispersal in elephants, higher variance of reproductive success among males than females, and of habitat changes driven by glacial cycles and human activity

Going extinct before being discovered? New lichen fungi from a small fragment of the vanishing Atlantic Rainforest in Brazil / Indo extinto antes de ser descoberto? Novos fungos liquenizados da evanescente Mata Atlântica no Brasil

Abstract In the frame of an ongoing lichen inventory of Atlantic Rainforest remnants in Northeast Brazil, five new species of Graphidaceae were discovered in a small forest fragment, Mata do Cipó, in Sergipe state, the smallest state of Brazil and among those with the highest deforestation rate in the country. An additional new species had already been collected in Panama before and was now also found in the Mata do Cipó and is described here as well. In total, 40 species of Graphidaceae are reported for this remnant, including a large number of taxa indicative of well-preserved rainforest. The new species are: Fissurina atlantica T.A. Pereira, M. Cáceres & Lücking, sp. nov., Graphis subaltamirensis Passos, M. Cáceres & Lücking, sp. nov., Ocellularia cipoensis L.A. Santos, M. Cáceres & Lücking, sp. nov., O. sosma T.A. Pereira, M. Cáceres & Lücking, sp. nov., O. submordenii Lücking, sp. nov. (also known from Panama), and Pseudochapsa aptrootiana M. Cáceres, T.A. Pereira & Lücking, sp. nov. The findings are discussed in the context of the strong fragmentation of the Atlantic Rainforest, with individual remnants apparently serving as refugia for residual populations of rare species of lichen fungi that were more widely distributed in the past, but currently seem to occur only in isolated fragments.

Resumo No âmbito de um inventário atual de liquens dos remanescentes da Mata Atlântica, no Nordeste do Brasil, cinco espécies novas de Graphidaceae foram descobertas em um pequeno fragmento florestal, Mata do Cipó, no estado de Sergipe, o menor estado do Brasil, o qual está entre aqueles com maior taxa de desmatamento no país. Uma nova espécie adicional já havia sido coletada no Panamá, anteriormente, e agora também foi encontrada na Mata do Cipó, e está sendo descrita aqui também. No total, 40 espécies de Graphidaceae são relatadas para este remanescente, incluindo um grande número de táxons indicadores de floresta bem preservada. As novas espécies são: Fissurina atlantica T.A. Pereira, M. Cáceres & Lücking, sp. nov., Graphis subaltamirensis Passos, M. Cáceres & Lücking, sp.nov., Ocellularia cipoensis L.A. Santos, M. Cáceres & Lücking, sp. nov., O. sosma T.A. Pereira, M. Cáceres & Lücking, sp. nov., O. submordenii Lücking, sp. nov. (também conhecido do Panamá), e Pseudochapsa aptrootiana M. Cáceres, T.A. Pereira & Lücking, sp. nov. Os achados são discutidos no contexto da forte fragmentação da Mata Atlântica, com remanescentes aparentemente servindo de refúgio para populações residuais de espécies raras de fungos liquenizados que, provavelmente, tiveram uma distribuição mais amplia no passado, mas que atualmente parecem ocorrer apenas em fragmentos isolados.

Trans-Amazon dispersal potential for Crotalus durissus during Pleistocene climate events / Potencial de dispersión trans-Amazónica de Crotalus durissus durante el Pleistoceno

Two disjunct distributional areas of Crotalus durissus (Neotropical rattlesnake) are in open habitats north and south of the Amazon Basin and are presently separated by humid rainforest habitats. We used ecological niche modeling to identify and investigate potential dispersal pathways for this species between the two areas during the late Pleistocene. Niches estimated for the two populations did not differ significantly. Our analyses indicated two possible, but a single most likely, potential routes of dispersal during the last glacial cycle. These results are important to understanding the history of Amazon Basin humid forest biotas, as they suggest agents of isolation among putative humid forest refugia in the form of dry forest and scrub, and associated biotas.

Actualmente existen dos áreas de distribución disyuntas de la serpiente de cascabel Crotalus durissus, afín a hábitats abiertos, al norte y al sur de la cuenca del Río Amazonas, separadas por selvas húmedas. Usamos técnicas de modelado de nicho ecológico para identificar corredores potenciales de dispersión para esta especie entre las dos áreas en el Pleistoceno tardío. Los nichos estimados para las poblaciones de cada una de las áreas de distribución no presentaron diferencias significativas. Nuestros análisis identificaron un corredor de dispersión más probable para esta especie durante el Último Máximo Glaciar. Estos resultados tienen implicaciones para el entendimiento de la historia de las biotas de las selvas húmedas del Amazonas, ya que sugieren causas de aislamiento entre refugios potenciales de selva húmeda, en la forma de selva seca y matorral.

Effects of crevice size on the establishment of macroalgae in subtropical streams / Efeitos do tamanho de fendas no estabelecimento de macroalgas em riachos subtropicais

Considering that in previous studies, the surface roughness (micrometric dimension) showed a weak effect on the colonization of stream macroalgae, we investigated the effects of different crevice sizes (milimetric dimension, a scale slightly higher than previous investigations) on the macroalgal abundance in three streams exposed to full sunlight in southern Brazil. We used smooth sterile glass plates with different shapes: P – plane surface without crevices; S – sinuous surface (depth of crevices with 0.159 mm ± 0.03); N – non-unifom surface (0.498 mm ± 0.09); C – surfaces with convex structures (1.190 mm ± 0.12); and three additional surface types with different patterns of heterogeneity with combinations of glass pieces: P + S (H1); P + S + N (H2) and P + S + N + C (H3). The plates were placed into the streams and after 105 days the percent cover of macroalgal community was measured. No significant differences among treatments were recorded. However, we observed a trend of macroalgae occurs within the crevices in all treatments and this suggests that, for stream macroalgae, the crevice sizes used in this study was still not enough to provide an expressive algal growth, even in the treatment with bigger crevices.

Considerando que em estudos anteriores a rugosidade da superfície (dimensão micrométrica) mostrou um fraco efeito sobre a colonização de macroalgas lóticas, nós investigamos os efeitos de tamanhos diferentes (em dimensões milimétricas, uma escala ligeiramente maior do que as investigações anteriores) sobre a abundância de macroalgas em três riachos expostos a pleno sol no sul do Brasil. Utilizamos placas lisas de vidro estéreis com formas diferentes: P – superficie plana sem fendas; S - superfície sinuosa (profundidade de fendas com 0.159 mm ± 0.03), N - superfície não-unifome (0.498 mm ± 0.09), C – superficie com estruturas convexas (1.190 mm ± 0.12), e três tipos de superfície adicionais com diferentes padrões de heterogeneidade construídas apartir da combinação de peças de vidro: P + S (H1), P + S + N (H2) e P + S + N + C (H3). As placas foram instaladas nos riachos e após 105 dias a cobertura percentual da comunidade de macroalgas foi medida. Não houve diferenças significativas entre os tratamentos. Porém, observamos uma tendência das macroalgas ocorrerem dentro das fendas em todos os tratamentos e, isso sugere que, para macroalgas lóticas, os tamanhos das fendas utilizadas neste estudo ainda não foram suficientes para proporcionar um expressivo crescimento de algas, mesmo no tratamento com fendas maiores.

Variation in body size of Phanocerus clavicornis Sharp, 1882 (Coleoptera: Elmidae: Larainae) in Atlantic Rainforest streams in response to hydraulic disturbance / Variação no tamanho corpóreo de Phanocerus clavicornis Sharp, 1882 (Coleoptera: Elmidae: Larainae) em córregos da Mata Atlântica sob perturbação hidráulica

In this study, patterns of body size of Phanocerus clavicornis Sharp, 1882 (Coleoptera: Elmidae: Larainae) were investigated along a gradient of change in speed of flow conditions in streams of low order in the Atlantic Rainforest in southeastern Brazil. Specifically, the hypothesis that the distribution of P. clavicornis larvae vary in size in response to variations in the speed of flow in streams was tested. A Surber sampler was used to collect larvae from the streambed during two sampling periods, defined by the rain regime: August in the dry season and February in the rainy season. Possible differences in mean measured body size were tested by analysis of variance (ANOVA). The ANOVA result indicated for all measurements on the larvae collected in first-order streams (head width, prothoracic width and total body length), there were significant differences indicating a morphometric variation due to changing hydraulic conditions, the smallest larvae being associated with the period of greater rainfall. However, the larger streams (3rd order), where the rain events had less impact on the larval size, varied widely. The results of this study suggest that the interstitial space is important for the protection of the larvae from water flow, and that populations of P. clavicornis have high plasticity, a key feature for the occupation of unstable environments for this species. These results are important for an understanding of the life history and behavioural characteristics of the species, which allow them to persist in streams along a gradient of flow disturbance.

Neste estudo, padrões de tamanho do corpo de Phanocerus clavicornis Sharp, 1882 (Coleoptera: Elmidae: Larainae) foram investigados ao longo de um gradiente de variação de velocidade da corrente em córregos de baixa ordem da Mata Atlântica. Especificamente, buscou-se testar a hipótese de que a distribuição de larvas de P. clavicornis com diferentes tamanhos corpóreos respondem às variações na velocidade da corrente em córregos. As coletas das larvas foram realizadas com um amostrador de Surber durante dois períodos amostrais, definidos pelo regime de chuvas: agosto - estação seca e fevereiro - estação chuvosa. Possíveis diferenças nas medidas de tamanho do corpo foram testadas através de uma análise de variância (ANOVA). Os resultados da ANOVA indicaram para todas as medidas das larvas coletadas nos córregos de primeira ordem (largura da cabeça, largura do protórax e comprimento total do corpo) encontramos diferenças significativas, indicando uma variação morfométrica com as mudanças das condições hidráulicas, onde as larvas menores foram associadas aos períodos de maior precipitação. No entanto, em córregos maiores (3a ordem), os eventos de chuva tiveram menor impacto no tamanho dos indivíduos, com a ocorrência de larvas com diferentes tamanhos. Os resultados deste estudo sugerem que os espaços intersticiais são importantes para a proteção das larvas contra a velocidade da corrente e que as populações de P. clavicornis possuem alta plasticidade, sendo uma característica fundamental para a ocupação desta espécie em ambientes instáveis. Esses resultados são importantes para a compreensão da história de vida e características comportamentais da espécie, que permitem persistir em córregos ao longo de gradiente de perturbação do fluxo.

Contribution to the discussions on the origin of the cerrado biome: Brazilian savanna / Contribuição às discussões sobre a origem do bioma cerrado: savana brasileira

Theories that attempt to explain the origin of the cerrado biome are mostly based on the isolated action of three major factors: climate, fire and soil. Another factor that has been mentioned is that of human interference. We hypothesise that the evolutionary origin of this biome resulted from the complex interaction of climate, fire and soil, with climate being the triggering agent of this assumed interaction. Fire, as well as acid and dystrophic soils, would be factors involved in the selection of savanna species throughout climatic events, during the Tertiary and the Quaternary, e.g. Pliocene and Pleistocene. The genesis of the physiognomies that would give rise to cerrado sensu lato, rather than forest formations, could have occurred due to the strong pressure exerted by the reduction in water availability, and the selection of the species adapted to the new conditions imposed by the environment. The characteristics of cerrado sensu lato soil, originated from edaphic impoverishment caused by lixiviation and successive past fires, would remain, even after hydric availability increased following the Pleistocene glaciations.

Teorias que tentam explicar a origem do bioma cerrado baseiam-se, principalmente, na ação isolada de três fatores principais: o clima, o fogo e o solo. Outro fator mencionado ainda é a interferência humana. Quanto à origem evolutiva desse bioma, o presente estudo propõe uma hipótese que considerou a complexa interação dos três primeiros fatores, mencionados acima, considerando o clima como elemento desencadeador dessa possível interação. O fogo e solos ácidos e distróficos teriam atuado como fatores de seleção de espécies savânicas, ao longo das oscilações climáticas durante o terciário e o quaternário, e.g. Plioceno e Pleistoceno. A gênese das fisionomias que passariam a compor o chamado cerrado sensu lato, em detrimento de formações florestais, teria resultado da forte pressão exercida pela redução da disponibilidade hídrica e da seleção de espécies adaptadas às novas condições impostas pelo ambiente. As características do solo, que passariam a manter o cerrado sensu lato, oriundas do empobrecimento edáfico pela lixiviação e sucessivos incêndios pretéritos, permaneceriam, mesmo com o restabelecimento de uma maior disponibilidade hídrica, após as glaciações do Pleistoceno.

Comparison of fish assemblages in two littoral habitats in a Neotropical morichal stream in Venezuela

Morichales are lowland streams in South American savannas with riparian forest dominated by the moriche palm (Mauritia flexuosa). We sampled littoral habitats from ten flooded vegetated patches (dominated by Mauritiella aculeate) and six sand banks in two months of the dry season (Feb-Mar 2005) in a stream in the savannas of Apure State, Venezuela. We collected samples that compromised 12,407 individual fishes of 107 species. Small-bodied fishes (< 100 mm), representing diverse trophic and life history strategies, were abundant. The most abundant species were in the families Characidae and Cichlidae. Fish assemblages from flooded vegetated patches differed significantly from those on adjacent sand banks. High structural complexity along vegetated shoreline habitats of morichal streams likely contributes to species richness and affects assemblage composition.

Morichales ou buritizais são tipos de habitats de planícies de savana da América do Sul com vegetação ripária dominada por buritis (Mauritia flexuosa). Nós amostramos habitats litorâneos de dez fragmentos de buritis e seis bancos de areia durante dois meses de estação seca (Fev-Mar de 2005) em um curso de água de savana no Estado de Apure, Venezuela. Foram coletados 12.407 peixes pertencentes a 107 espécies. Espécies de pequeno porte (< 100 mm), representando diversas estratégias de vida e categorias tróficas foram abundantes. As espécies mais abundantes pertenceram às famílias Characidae e Cichlidae. As assembléias de peixes dos fragmentos de vegetação inundada (buritis) diferiram significantemente daquelas dos bancos de areia adjacentes. A elevada complexidade estrutural ao longo dos habitats marginais dos riachos que corriam pelos buritizais provavelmente contribuiu para a riqueza de espécies e influenciou a composição das assembléias nesses sistemas.