Genotyping and antimicrobial susceptibility of Clostridium perfringens isolated from Tinamidae, Cracidae and Ramphastidae species in Brazil / Genotipagem e sensibilidade antimicrobiana de estirpes de Clostridium perfringens isolados de espécies de Tinamidae, Cracidae e Ramphastidae no Brasil

The aim of this study was to isolate, genotype and evaluate the antimicrobial susceptibility of Clostridium perfringens found in species Tinamidae, Cracidae and Ramphastidae in Brazil. C. perfringens was isolated in 13 (5%) out of 260 swab samples and five (8.3%) out of 60 stool samples. All strains were classified as C. perfringens type A, and nine (50%) were positive for the beta-2 toxin-encoding gene. No strains were positive for the necrotic enteritis toxin B-like (NetB)-encoding gene. All isolates were susceptible to penicillin, metronidazole and vancomycin, whereas four (22.2%), five (27.8%) and 13 (72.2%) strains were considered resistant to erythromycin, oxytetracycline and lincomycin, respectively.

O objetivo do presente estudo foi isolar, genotipar e avaliar a sensibilidade antimicrobiana de estirpes de Clostridium perfringens de espécies de Tinamidae, Cracidae e Ramphastidae no Brasil. C. perfringens foi isolado de 13 (5%) dos 260 suabes e de cinco (8,3%) das 60 amostras de fezes. Todos os isolados foram classificados como C. perfringens, tipo A, e nove (50%) foram positivos para o gene cpb2, responsável pela produção da toxina beta-2. Nenhuma estirpe foi positiva para o gene que codifica a produção da toxina NetB. Todos os isolados avaliados foram sensíveis à penincilina, metronidazol e vancomicina, enquanto que quatro (22,2%), cinco (27,8%) e 13 (72,2%) foram considerados resistentes à eritromicina, oxitetraciclina e lincomicina, respectivamente.

Diversity and genetic structure analysis of three Amazonian Amerindian populations from Colombia / Análisis de la diversidad y la estructura genética de tres poblaciones indígenas amazónicas colombianas

Introduction: In the departments of the Vaupés and Guaviare, in southeastern Colombia, in a transitional area between Amazonia and the eastern plains, inhabit indigenous groups belonging to the Tukanoan (East) and Guahiban linguistic families. Although some studies have dealt with the culture and the cosmology description of these groups, little research has been done on the biological diversity and genetic relationships of such groups.Objective: To estimate the diversity, the structure, and the genetic relationships of one Guahiban and two Tukanoan groups of the Colombian Amazonian region.Methods: Samples were collected (n = 106) from unrelated individuals belonging to the Vaupés native indigenous communities. The DNA was extracted and nine autosomal microsatellites were typed. Several measures of diversity, FST, pairwise FST, and population differentiation between groups were calculated. Finally, it was estimated the genetic distances of the groups studied in relation with other Amazonian, Andean and Central American indigenous people.Results: 1. The genetic diversity found stands within the range of other Amazonian populations, whereas compared to the mestizo and afro-descendant Colombian populations, such diversity showed to be lower. 2. The structure and population differentiation tests showed two clusters; one consisting of the Vaupés Tukanoan and Guaviare Tukanoan groups, and a second one formed by the Guayabero. 3. Tukanoan groups are found to be closer related to the Brazilian Amazonian populations than to the Guayabero.Conclusion: The results of this study suggest that the Guayabero group from Guaviare, are genetically differentiated from those Tukanoan groups of the Vaupés and Guaviare