COVID-19 surveillance via wastewater:Introduction of wastewater-based epidemiology / 西安交通大学学报(医学版)

Since the outbreak of the COVID-19 global pandemic in 2019, monitoring COVID-19 infection status and trend through wastewater, known as wastewater-based epidemiology (WBE), has been widely used in many countries and regions. WBE consists of five steps:wastewater sample collection, viral concentration, viral nucleic acid extraction, quantification of virus using quantitative RT-PCR, and dissemination of the wastewater surveillance results. This method could be used for early warning of COVID-19 outbreak in a population, monitoring COVID-19 distributions and epidemic trend, prediction of COVID-19 prevalence rate, understanding of temporal trend of SARS-COV-2 variants, and simultaneous surveillance of multiple pathogens. WBE and clinical surveillance can be used concurrently and the former is a good complement to the latter.

Detección y cuantificación de SARS-CoV-2 en plantas de tratamiento de aguas residuales de diferentes ciudades de Chile: hacia la implementación de una vigilancia centinela permanente / Detection and quantification of SARS-CoV-2 wastewater treatment plants from different cities in Chile; towards to a permanent sentinel surveillance

INTRODUCCIÓN: La cuantificación de SARS-CoV-2 en aguas residuales es una herramienta que permite determinar la tendencia de la circulación viral en un área geográfica determinada. OBJETIVO: Cuantificar el virus SARS-CoV-2 en 15 plantas de tratamiento de aguas residuales en diferentes ciudades de Chile para establecer una comparación con las variables de: i) casos activos por cada 100.000 habs.; ii) positividad diaria (casos nuevos); y iii) fases del plan de confinamiento. METODOLOGÍA: SARS-CoV-2 se concentró a partir de muestras de aguas residuales. Para obtener el número de genomas del virus por litro se realizó una cuantificación absoluta utilizando qRT-PCR. RESULTADOS: Entre enero y junio de 2021 se procesaron 253 muestras, siendo todas positivas para la presencia del virus. Asimismo, se logró determinar que la tasa de casos activos por cada 100.000 habs. es la variable que mejor se ajusta a las tendencias obtenidas con la cuantificación de la carga viral en las aguas residuales. CONCLUSIONES: La cuantificación de SARS-CoV-2 en las aguas residuales de manera permanente es una herramienta eficiente para determinar la tendencia del virus en un área geográfica determinada y, en conjunto con una vigilancia genómica, puede constituirse en una vigilancia centinela ideal generando alertas sobre futuros brotes.

BACKGROUND: The quantification of SARS-CoV-2 in wastewater is a tool that allows determining the trend of viral circulation in a particular geographical area. AIM: To quantify the SARS-CoV-2 virus in 15 wastewater treatment plants in different Chilean cities to establish a comparison with the variables of: i) Active cases per 100,000 inhabitants; ii) daily positivity (novel cases); and iii) phases of the lockdown strategy. METHODS: SARS-CoV-2 was concentrated from wastewater samples. To obtain the number of virus genomes per liter, absolute quantification was performed using qRT-PCR. RESULTS: Between January and June 2021, 253 samples were processed, all of which were positive for the presence of the virus. Likewise, it will be determined that the rate of active cases per 100,000 inhabitants is the variable that best fits the trends obtained with the quantification of the viral load in wastewater. CONCLUSIONS: The quantification of SARS-CoV-2 in wastewater as a continuous strategy is an efficient tool to determine the trend of the viral circulation in a delimited geographical area and, combined with genomic surveillance, it can constitute an ideal sentinel surveillance alert on future outbreaks.

Review of a new investigation method based on wastewater-based epidemiology / 上海预防医学

Due to the lack of real-time monitoring information of traditional epidemiological investigation methods， in recent years， a new method of obtaining relevant epidemiological information through wastewater analysis has become an effective way to maintain the health of the population， which is called wastewater-based epidemiology. Information obtained from the chemical analysis of wastewater can be used to estimate exposure or consumption of chemicals. This work introduces the principle and the investigation method of wastewater-based epidemiology. Compared with traditional epidemiological survey methods， the advantages and disadvantages of wastewater-based epidemiology are analyzed. Development and prospects of wastewater-based epidemiological investigation methods in China are analyzed and some suggestions are discussed.

Monitoramento do esgoto como ferramenta de vigilância epidemiológica para controle da COVID-19: estudo de caso na cidade de Belo Horizonte / Sewage monitoring as a surveillance epidemiological tool for COVID-19 control: a case study in the city of Belo Horizonte

RESUMO A recente detecção de material genético (RNA) do novo coronavírus em amostras de fezes e no esgoto aponta para a possibilidade de se identificar a circulação do vírus e até mesmo estimar o número de pessoas infectadas em determinada região pelo monitoramento sistemático do esgoto, configurando-se em importante ferramenta epidemiológica de testagem massiva indireta, incluindo portadores sintomáticos e assintomáticos. Nesse sentido, concebeu-se um projeto para a detecção e a quantificação do novo coronavírus em amostras de esgoto coletadas em 15 sub-bacias de esgotamento sanitário dos ribeirões Arrudas e Onça, visando entender a dinâmica de circulação e a prevalência do vírus nas regiões investigadas. Tais sub-bacias esgotam os efluentes gerados por uma população da ordem de 1,5 milhão de pessoas no município de Belo Horizonte e parte de Contagem. O plano de amostragem contemplou 17 pontos (15 sub-bacias + afluente às 2 estações de tratamento de esgoto) de monitoramento semanal, com coletas compostas durante todo o período da manhã. A detecção e a quantificação do RNA viral efetuaram-se em laboratório por meio de ensaios de RT-qPCR. Os resultados obtidos em quatro semanas de monitoramento (semanas epidemiológicas 21 a 24) mostraram um incremento da ocorrência do vírus, atingindo 100% das regiões investigadas na semana epidemiológica 24. A estimativa da população infectada pelo novo coronavírus pelo monitoramento do esgoto em Belo Horizonte apresentou tendência de crescimento exponencial, sendo até 20 vezes maior do que o número de casos confirmados acumulados. Quanto à circulação do vírus, as concentrações do RNA viral têm se mostrado bastante variáveis nas regiões monitoradas, com maiores porcentagens de população infectada estimada ao norte e nordeste da capital mineira.

ABSTRACT The recent detection of SARS-CoV-2 RNA in stool and sewage samples highlights the possibility of mapping the circulation of the virus and even estimating the number of infected people through the systematic monitoring of sewage in a specific region. Therefore, this is an important epidemiological tool for large-scale indirect testing, including symptomatic and asymptomatic carriers. This project was conceived for the detection and quantification of the SARS-CoV-2 in sewage samples collected in 15 watersheds of the Arrudas and Onça streams, aiming to understand the dynamics of spread and the prevalence of the virus in these regions/watersheds. These sub-basins exhaust the effluents generated by a population of approximately 1.5 million people in the municipality of Belo Horizonte and part of Contagem. Weekly composite samples were collected during the morning periods in seventeen monitoring points (15 water sheds + influent to 2 sewage treatment plants). RNA detection and quantification were performed in the laboratory using RT-qPCR. The results obtained in four weeks of monitoring (epidemiological weeks 21 to 24) showed an increase in the occurrence of the virus, reaching 100% of the monitored regions investigated in epidemiological week 24. The infected population, estimated by sewage monitoring in Belo Horizonte, showed exponential growth, being up to 20 times higher than those of accumulated confirmed cases. As for the dynamics of virus spread, RNA concentrations have shown to be quite variable in the monitored regions with higher percentages of the estimated infected population in the northern and north-eastern portions of Belo Horizonte.