Gene ontology based characterization of Expressed Sequence Tags (ESTs) of Brassica rapa cv. Osome.

Chinese cabbage (Brassica rapa) is widely recognized for its economic importance and contribution to human nutrition but abiotic and biotic stresses are main obstacle for its quality, nutritional status and production. In this study, 3,429 Express Sequence Tag (EST) sequences were generated from B. rapa cv. Osome cDNA library and the unique transcripts were classified functionally using a gene ontology (GO) hierarchy, Kyoto encyclopedia of genes and genomes (KEGG). KEGG orthology and the structural domain data were obtained from the biological database for stress related genes (SRG). EST datasets provided a wide outlook of functional characterization of B. rapa cv. Osome. In silico analysis revealed % 83 of ESTs to be well annotated towards reeds one dimensional concept. Clustering of ESTs returned 333 contigs and 2,446 singlets, giving a total of 3,284 putative unigene sequences. This dataset contained 1,017 EST sequences functionally annotated to stress responses and from which expression of randomly selected SRGs were analyzed against cold, salt, drought, ABA, water and PEG stresses. Most of the SRGs showed differentially expression against these stresses. Thus, the EST dataset is very important for discovering the potential genes related to stress resistance in chinese cabbage, and can be of useful resources for genetic engineering of Brassica sp.

Effects of some botanical extracts on the midgut, integument and fat body of the cotton leaf worm, spodoptera littoralis [lepidoptera: noctuidae]

Botanical extracts [8%] of four plants [Artemisia monosperma, Zygophyllum cocccineum, Lupinus termis and Brassica tournifortii] fed to the 4[th] larval in-stars of Spodoptera littoralis induced histopathological changes in the structure of the midgut, integument and fat body of the 5[th] instars. Zygophyllum coccineum and Lupinus termis induced severe damages in the midgut. The integument of treated larvae showed degeneration in the cuticle and epidermal cells which were also detached from each other. Water extracts of A. monosperma, Z. coccinieum and L. termis were the most promising in inducing shrinkage in the fat body cells and detachment of midgut muscle layers. Also, the degeneration of the midgut membrane and epithelial layer occurs in different degrees with the tested plants. This study supports the use of botanical extracts in pest control programs of lepidopterous insects

Effect of alternaria pathotoxin(s) on expression of p53-like apoptotic protein in calli and leaves of Brassica campestris.

Possible involvement of apoptosis was investigated in pathotoxin-treated and nutritionally-depleted in vitro cultured calli by comparing levels of p53-like protein. Antibodies raised against human p53 were used to detect and quantify p53 in B. campestris. Expression of p53-like protein increased from proliferating to static growth stage and reached to constant level at decaying stage. Both ELISA and dot immuno-binding assay showed that p53-like protein was over expressed in toxin treated and nutritionally depleted calli. Almost similar changes were seen in senescent damage in Brassica species indicating involvement of p53 dependent pathways.

Fungal metabolites from Aspergillus niger AN27 related to plant growth promotion.

Two metabolites have been isolated from Aspergillus niger AN27, a biocontrol agent, and identified as 2-carboxymethyl 3-n-hexyl maleic acid (compound 1) and 2-methylene-3-hexylbutanedioic acid (compound 2). Their biological activities related to crop growth promotion have been assayed. Both the compounds increased germination and improved crop vigour. Compound 1 was more effective for increase in germination and shoot length, whereas compound 2 had relatively greater role in increasing the root length and biomass of cauliflower seedlings.