Molecular characterization and transcriptional analysis of VrWOX genes in mungbean Vigna radiate (L.) Wilczek / 生物工程学报

WUSCHEL-related homebox (WOX) gene family is a type of plant specific transcription factor, and belongs to the homeobox (HB) transcription factor superfamily. WOX genes play an important role in plant development, such as stem cell regulation and reproductive progress, and have been identified in many plant species. However, the information of mungbean VrWOX genes is limited. In this study, we identified 42 VrWOX genes in mungbean genome using Arabidopsis AtWOX genes as BLAST queries. VrWOX genes are unevenly distributed on 11 mungbean chromosomes, and chromosome 7 contains the most VrWOX genes. VrWOX genes are classified into three subgroups, the ancient group, the intermediate group and the modern/WUSCHEL group, which contains 19, 12 and 11 VrWOX members, respectively. Intraspecific synteny analysis revealed 12 VrWOX duplicated gene pairs in mungbean. Mungbean and Arabidopsis thaliana have 15 orthologous genes, and mungbean and Phaseolus vulgaris have 22 orthologous genes, respectively. The gene structure and conserved motif are different among VrWOX genes, indicating their functional diversity. The promoter regions of VrWOX genes contain different number and type of cis-acting elements, and VrWOX genes show distinct expression levels in eight mungbean tissues. Our study investigated the bioinformation and expression profiles of VrWOX genes, and provided essential information for further functional characterization of VrWOX genes.

Molecular diagnosis and intraspecific genetic variability of root pathogens of arid legumes in Western Rajasthan, India / Diagnóstico molecular y la variabilidad genética intraespecífica de patógenos de raíces en leguminosas resistentes a sequías del oeste de Rajasthan, India

Abstract:The productivity of arid legumes, such as Clusterbean (Cyamopsis tetragonoloba), Cowpea (Vigna unguiculata), Moth bean (Vigna aconitifolia) and Horse gram (Macrotyloma uniflorum), may remain stagnant over decades because of their high susceptibility to root diseases. Besides, there is a limitation on the information about molecular diagnosis and intraspecific genetic variability of root pathogens in arid legumes. To contribute in this field, we assessed a total of 52 isolates from 88 root samples that were found infected with fungal pathogens in Jodhpur, Jaipur and Bikaner Districts of Rajasthan. Diseased roots samples were analyzed following standard microbiological methods for fungus extraction and purification, and for genetic studies. Irrespective of the geographical location from where the diseased samples were collected, all pathogen isolates were clustered in RAPD dendrograms as per their respective genera. Phylogram, based on multiple sequence alignment, revealed that different genera (i.e. Fusarium, Neocosmospora and Syncephalastrum), separated from each other, and species within the same genera, clustered together with their reference sequences with apreciable bootstrap values. Out of 20 representative isolates representing each cluster and all outgroups sequenced, eight were molecularly identified as Neocosmospora vasinfecta, five as Fusarium solani, two as Neocosmospora striata, two as Fusarium acutatum, one as Syncephalastrum monosporum, one as Fusarium oxysporum and one as Fusarium species. The root pathogens of the arid legumes were found neither restricted to a geographical location nor were host specific in nature. Fusarium solani wilt in cowpea and seedling rot in moth bean, F. oxysporum wilt in moth bean, F. acutatum damping off in cowpea and Clusterbean, Fusarium sp. seedling rot in Clusterbean, Neocosmospora striata root rot in cowpea and wilt in Clusterbean and Syncephalastrum monosporum root rot in Clusterbean were molecularly identified as new fungal records as pathogens causing root diseases in arid legumes. Rev. Biol. Trop. 64 (4): 1505-1518. Epub 2016 December 01.

Resumen:La producción de leguminosas resistentes a sequías como Cyamopsis tetragonoloba, Vigna unguiculata, Vigna aconitifolia y Macrotyloma uniflorum, puede permanecer inactiva durante décadas debido a su alta susceptibilidad a enfermedades en las raíces. Además, hay información limitada relacionada con el diagnóstico molecular y la variabilidad genética intraespecífica de patógenos de raíces en estas leguminosas resistentes a sequías. Para contribuir en esta área, evaluamos un total de 52 extractos de 88 raíces infectadas con patógenos fúngicos en los distritos de Jodhpur, Jaipur y Bikaner de Rajastán. Las muestras de raíces infectadas se analizaron siguiendo los métodos estándar de microbiología para extracción y purificación de hongos y para estudios genéticos. Independientemente del sitio donde se recolectaron las muestras contaminadas, todos los extractos patógenicos se agruparon en dendrogramas RAPD en cada uno de sus respectivos géneros. El filograma, basado en alineamiento de secuencias múltiples reveló que distintos géneros (Fusarium, Neocosmospora y Syncephalastrum) separados entre ellos y especies del mismo género se agrupan con sus secuencias de referencia con valores de bootstrap significativos. De cada 20 extractos representantes de cada agrupamiento y todos los grupos externos secuenciados, ocho fueron identificados molecularmente como Neocosmospora vasinfecta, dos como Fusarium acutatum, una como Syncephalastrum monosporum, una como Fusarium oxysporum y una como Fusarium. Los patógenos de estas leguminosas resistentes a sequías no están restringidos por la localidad ni por un hospedero específico. Fusarium solani que marchita el frijol de vaca y pudre la semilla de Vigna aconitifolia, F. oxysporum que marchita a Vigna aconitifolia, F. acutatum que marchita a Vigna unguiculata y Cyamopsis tetragonoloba, Fusarium sp. que pudre la semilla de Cyamopsis tetragonoloba, Neocosmospora striata que pudre la raíz de Vigna unguiculata y marchita a Cyamopsis tetragonoloba y, Syncephalastrum monosporum que pudre la raíz en Cyamopsis tetragonoloba, fueron identificados molecularmente como nuevos registros de patógenos fúngicos que causan daños en las raíces de leguminosas resistentes a sequías.

Draft genome sequence of Bradyrhizobium sp. strain BR 3267, an elite strain recommended for cowpea inoculation in Brazil

The strain BR 3267 is a nitrogen-fixing symbiotic bacteria isolated from soil of semi-arid area of Brazilian Northeast using cowpea as the trap plant. This strain is used as commercial inoculant for cowpea and presents high efficient in nitrogen fixation as consequence of its adaptation potential to semi-arid conditions. We report here the draft genome sequence of Bradyrhizobium sp. strain BR 3267, an elite bacterium used as inoculant for cowpea. Whole genome sequencing of BR 3267 using Illumina MiSeq sequencing technology has 55 scaffolds with a total genome size of 7,904,309 bp and C+G 63%. Annotation was added by the RAST prokaryotic genome annotation service and has shown 7314 coding sequences and 52 RNA genes.

Descrição de cultivares locais de feijão-caupi coletados na microrregião Cruzeiro do Sul, Acre, Brasil / Description of local cowpea cultivars from the microregion of Cruzeiro do Sul, Acre, Brazil

Local varieties of cowpea beans (Vigna unguiculata) are exposed to genetic erosion due to the introduction of commercial seeds. The aim of this study was to describe local germplasm of cowpea beans from Resex Alto Juruل and microrregion of Cruzeiro do Sul, Acre, Brazil. Two experiments were conducted either using the conventional agricultural system (in 2011), or in an alley cropping system (in 2012). The experimental was a randomized block design with nine treatments (cultivars) and three replicates per treatment. The plots were 12 m2 in size and rows were 0.45 m apart. Twenty qualitative and 21 quantitative characters were observed. The combined analysis of variance showed significant effects for genotype, agricultural system and for the interaction genotype/agricultural system. The qualitative trait with greater variation among genotypes were the commercial subclass according to the classification adopted by the Brazilian Ministry of Agriculture, followed by grain color, immature pod pigmentation, apical leaflet shape, leaf color and pod curvature. The plant habit, twinning tendency, pod attachment to peduncle and the pod wall thickness did not show differences. Among the quantitative traits, days to flowering and number of locules per pod did not differ between cultivars. Mean values for pod length, peduncle length, number of pods per peduncle and number of pods per plant were low. However, the germplasm collected showed good agronomic traits such as earliness, appropriate plant architecture, and adaptation to floodplain cultivation.

A distribuição de sementes comerciais ameaça erodir o germoplasma local em regiões tradicionais de plantio de feijões-caupi (Vigna unguiculata). O objetivo deste trabalho foi descrever as cultivares locais de feijão-caupi da Resex Alto Juruá e da microrregião Cruzeiro do Sul - AC. Foram conduzidos dois experimentos nos anos de 2011 e 2012, em sistema convencional e, em sistema de plantio em aleias, respectivamente. O delineamento experimental adotado nos experimentos foi de blocos ao acaso com nove tratamentos (cultivares), três repetições por tratamento, parcelas de 12 m2 e espaçamento de 0,45 m entre plantas e linhas. Foram observados vinte caracteres qualitativos e 21 quantitativos. A análise de variância conjunta dos experimentos apresentou significativo para genótipo, sistema de plantio e interação genótipo/sistema de plantio. A característica qualitativa com maior variação entre os genótipos foi subclasse comercial, seguida da cor do grão, pigmentação da vagem imatura, forma do folíolo apical, cor das folhas e curvatura da vagem. O hábito da planta, tendência a enrolar-se ao tutor, fixação da vagem ao pedúnculo e espessura de parede da vagem não apresentam diferenças. Dos caracteres quantitativos apenas número de dias até 50% das plantas em florescimento e número de lóculos/vagem não diferiram estatisticamente entre cultivares. Os valores médios para comprimento de vagem, comprimento do pedúnculo, número de vagens por pedúnculo e número de vagens por planta foram baixos, entretanto, o germoplasma coletado apresentou características valorizadas como ciclo precoce, arquitetura adequada da planta além da adaptação ao plantio em várzeas.