In silico genome-wide screening for TnrA-regulated genes of Bacillus clausii
IJB-Iranian Journal of Biotechnology. 2012; 10 (1): 61-65
in English
| IMEMR
| ID: emr-122608
ABSTRACT
Bacillus clausii TnrA transcription factor is required for global nitrogen regulation. In order to obtain an overview of gene regulation by TnrA in B. clausii KSM-K16, the entire genome of B. clausii was screened for the consensus sequence, 5'-TGTNAN7TNACA-3' known as the TnrA box, and 13 transcription units were found containing a putative TnrA box. The TnrA targets identified in this study were tnrA, glnA, nrgA, nasFDEB, puc genes, licT, the two operons of the oligopeptide ABC transporter, lytR, transcriptional regulator of the Lrp/AsnC family, sodium-dependent transporter of SNF family, hyu genes and a biochemically uncharacterized protein
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Index:
IMEMR (Eastern Mediterranean)
Main subject:
Operon
/
Repressor Proteins
/
Bacteriocins
/
Transcription Factors
/
Consensus Sequence
/
Genome
/
ATP-Binding Cassette Transporters
/
Regulatory Elements, Transcriptional
/
Genome-Wide Association Study
/
Glutamate-Ammonia Ligase
Type of study:
Screening study
Language:
English
Journal:
Iran. J. Biotechnol.
Year:
2012
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