An automated annotation tool for genomic DNA sequences using GeneScan and BLAST.

Lynn, A M; Jain, C K; Kosalai, K; Barman, P; Thakur, N; Batra, H; Bhattacharya, A

Lynn, A M; Jain, C K; Kosalai, K; Barman, P; Thakur, N; Batra, H; Bhattacharya, A.

J Genet ; 2001 Apr; 80(1): 9-16

Article in English | IMSEAR | ID: sea-114357

ABSTRACT

ABSTRACT

Genomic sequence data are often available well before the annotated sequence is published. We present a method for analysis of genomic DNA to identify coding sequences using the GeneScan algorithm and characterize these resultant sequences by BLAST. The routines are used to develop a system for automated annotation of genome DNA sequences.

Subject(s)

Algorithms; Animals; Eukaryotic Cells; Evolution, Molecular; Fourier Analysis; Genetics, Microbial; Genomics; Plasmodium falciparum/genetics; Sequence Analysis, DNA; Software

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Full text: Available Index: IMSEAR (South-East Asia) Main subject: Plasmodium falciparum / Algorithms / Software / Sequence Analysis, DNA / Evolution, Molecular / Genomics / Eukaryotic Cells / Fourier Analysis / Genetics, Microbial / Animals Language: English Journal: J Genet Year: 2001 Type: Article

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