Java DOM Parsers to Convert KGML into SBML and BioPAX Common Exchange Formats
Genomics & Informatics
;
: 94-96, 2010.
Article
in English
| WPRIM
| ID: wpr-199705
ABSTRACT
Integrating various pathway data collections to create new biological knowledge is a challenge, for which novel computational tools play a key role. For this purpose, we developed the Java-based conversion modules KGML2SBML and KGML2BioPAX to translate KGML (KEGG Markup Language) into a couple of common data exchange formats SBML (Systems Biology Markup Language) and BioPAX (Biological Pathway Exchange). We hope that our work will be beneficial for other Java developers when they extend their bioinformatics system into SBML- or BioPAX-aware analysis tools. This is part of our ongoing effort to develop an ultimate KEGG-based pathway enrichment analysis system.
Full text:
Available
Index:
WPRIM (Western Pacific)
Main subject:
Biology
/
Computational Biology
/
Systems Biology
/
DOM 2,5-Dimethoxy-4-Methylamphetamine
/
Indonesia
Country/Region as subject:
Asia
Language:
English
Journal:
Genomics & Informatics
Year:
2010
Type:
Article
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