RGISS: Rice (Oryza sativa L. ssp. japonica) Genome Information Service System
Genomics & Informatics
;
: 194-195, 2007.
Article
in English
| WPRIM
| ID: wpr-21114
ABSTRACT
We have constructed the Rice Genome Information Service System (RGISS), which is an information service system of the Oryza sativa L. ssp. japonica (rice) genome, using the released version of rice Build 3.0 pseudomolecules based on the Ensembl architecture. The nonredundant library, composed of 3,360 clones of BACs, PACs, and fosmids, was used to construct supercontigs. RGISS contains 50,717 annotated genes from GenBank, 56,161 predicted genes from FgeneSH, and information on 9,587 markers, which includes STS, SSR, and EST-based RFLP. The 20,180 ESTs sequenced by the Korea National Institute of Agricultural Biotechnology (NIAB) were aligned and mapped into 168,792 exons. By gene ontology analysis, the classified protein numbers in the rice genome were 6158, 4531, and 12,364 proteins, which were mapped to molecular function, cellular component, and biological process, respectively.
Full text:
Available
Index:
WPRIM (Western Pacific)
Main subject:
Oryza
/
Biological Phenomena
/
Biotechnology
/
Polymorphism, Restriction Fragment Length
/
Exons
/
Genome
/
Clone Cells
/
Expressed Sequence Tags
/
Databases, Nucleic Acid
/
Gene Ontology
Country/Region as subject:
Asia
Language:
English
Journal:
Genomics & Informatics
Year:
2007
Type:
Article
Similar
MEDLINE
...
LILACS
LIS