Sequence analysis of a novel human leukocyte antigen allele B*5827 / 中华医学遗传学杂志
Chinese Journal of Medical Genetics
;
(6): 88-91, 2011.
Article
in Chinese
| WPRIM
| ID: wpr-234311
ABSTRACT
<p><b>OBJECTIVE</b>To investigate the molecular basis for a novel human leukocyte antigen (HLA) allele B*5827.</p><p><b>METHODS</b>DNA from the proband was analyzed by polymerase chain reaction-sequence specific oligonucleotide (PCR-SSO) typing. The amplified product was sequenced bidirectionally.</p><p><b>RESULTS</b>Abnormal HLA-B locus was observed and its nucleotide sequence was different from the known HLA-B allele sequences, with highest homology to HLA-B*5820 allele. It differs from HLA-B*5820 by 8 nucleotide substitutions in exon 3, i.e., nt 290 (G > C), nt 346 (T > A), nt 390 (A > C), nt 404 (G > C), nt 413 (C > G), nt 471 (A > G), nt 486 (A > G) and nt 487 (C > A), resulting in an amino acid change from ser > arg at nt 97, phe >tyr at nt 115, ser > arg at nt 130, thr > ala at nt 157 and thr > glu at nt 162. Nucleotide differences of nt 404 (G > C) and nt 413( C > G) did not change amino acid.</p><p><b>CONCLUSION</b>The sequences of the novel allele have been submitted to GenBank (access No.GU071234). A novel HLA class I allele B*5827 has been officially assigned by the WHO HLA Nomenclature Committee in Jan. 2010.</p>
Full text:
Available
Index:
WPRIM (Western Pacific)
Main subject:
Molecular Sequence Data
/
Base Sequence
/
HLA-B Antigens
/
Chemistry
/
Polymerase Chain Reaction
/
Cloning, Molecular
/
Sequence Analysis, DNA
/
Alleles
/
Genetics
/
Genotype
Limits:
Humans
Language:
Chinese
Journal:
Chinese Journal of Medical Genetics
Year:
2011
Type:
Article
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