Molecular epidemiological study on rubella virus strains isolated in Zhejiang province, China,2005-2010 / 中华流行病学杂志

ABSTRACT

Objective To analyze the molecular epidemiological characteristic of rubella virus strains isolated in Zhejiang province from 2005 to 2010, to provide basic data for rubella prevention and control. Methods Rubella virus strains were isolated on Vero cells from the suspected patients' specimens collected in Zhejiang province during 2005 to 2010. Partial fragments of the structural gene of Zhejiang rubella strains were amplified, using nested reverse transcription-polymerase chain reaction (RT-PCR). The amplified products were sequences and analyzed.Results In total, 7 rubella strains were isolated from 52 clinical specimens, of which six were classified as genotype I E and only one was characterized as genotype 2B. In the phylogenetic tree, the Zhejiang IE genotype rubella strains were located in the same branches with Hongkong or Hainan isolates respectively, but the Zhejiang 2B genotype strain were located in the same branch with oversea strain BuenosAires.ARG/46.08. Through p-distance analysis, results also showed that the Zhejiang 2B genotype strain was closer to the 2B strains isolated from overseas (0.011 ) than those strains from other provinces of China (0.023). Compared with Chinese vaccine strain BRD Ⅱ, the homology on three structural genes was C＞E2＞E1, but the homology of deduced amino acid sequence was E1 ＞ C ＞ E2, with corresponding 3,11 and 23 amino acid mutations. There was only one amino acid on E1 gene with entropy value higher than 0.600, but seven sites on E2 gene with entropy value appeared higher than 0.600 and one with entropy value higher than 1.000. Conclusion Two genotypes of rubella virus had circulated in Zhejiang province during 2005 to 2010. Genotype IE appeared to be the predominant genotype and 2B being an imported one. Amino acid sequence of E1 gene from Zhejiang rubella strains was comparatively conserved, but E2 gene was hypervariable.Study on rubella virus E2 and C gene should be conducted in the epidemiological surveillance program of rubella.