Building the Frequency Profile of the Core Promoter Element Patterns in the Three ChromHMM Promoter States at 200bp Intervals: A Statistical Perspective
Genomics & Informatics
;
: 152-155, 2015.
Article
in English
| WPRIM
| ID: wpr-42758
ABSTRACT
Recently, the Encyclopedia of DNA Elements (ENCODE) Analysis Working Group converted data from ChIP-seq analyses from the Broad Histone track into 15 corresponding chromatic maps that label sequences with different kinds of histone modifications in promoter regions. Here, we publish a frequency profile of the three ChromHMM promoter states, at 200-bp intervals, with particular reference to the existence of sequence patterns of promoter elements, GC-richness, and transcription starting sites. Through detailed and diligent analysis of promoter regions, researchers will be able to uncover new and significant information about transcription initiation and gene function.
Full text:
Available
Index:
WPRIM (Western Pacific)
Main subject:
DNA
/
Histones
/
Promoter Regions, Genetic
/
Epigenomics
Language:
English
Journal:
Genomics & Informatics
Year:
2015
Type:
Article
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