Draft genome of a South African strain of Pectobacterium carotovorum subsp. brasiliense
Braz. j. microbiol
;
48(1): 11-12, Jan.-Mar. 2017.
Article
Dans Anglais
| LILACS
| ID: biblio-839337
ABSTRACT
Abstract The draft genome of Pectobacterium carotovorum subsp. brasiliense (Pcb) which causes blackleg of potato was submitted to the NCBI and released with reference number NZ_LGRF00000000.1. The estimated genome size based on the draft genome assembly is 4,820,279 bp from 33 contigs ranging in length from 444 to 1,660,019 nucleotides. The genome annotation showed 4250 putative genes, 4114 CDS and 43 pseudo-genes. Three complete rRNA gene species were detected nine 5S, one 16S and one 23S. Other partial rRNA gene fragments were also identified, nine 16S rRNA and three 23S rRNA. A total of 69 tRNA genes and one ncRNA gene were also annotated in this genome.
Texte intégral:
Disponible
Indice:
LILAS (Amériques)
Sujet Principal:
Génome bactérien
/
Pectobacterium carotovorum
/
Génomique
Pays comme sujet:
Amérique du Sud
/
Brésil
langue:
Anglais
Texte intégral:
Braz. j. microbiol
Thème du journal:
Microbiologie
Année:
2017
Type:
Article
Pays d'affiliation:
République d'Afrique du Sud
Institution/Pays d'affiliation:
University of South Africa/ZA
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