A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation
Genet. mol. res. (Online)
;
4(3): 590-598, 2005. tab, ilus
Article
Dans Anglais
| LILACS
| ID: lil-444952
ABSTRACT
Interpro is a widely used tool for protein annotation in genome sequencing projects, demanding a large amount of computation and representing a huge time-consuming step. We present a strategy to execute programs using databases Pfam, PROSITE and ProDom of Interpro in a distributed environment using a Java-based messaging system. We developed a two-layer scheduling architecture of the distributed infrastructure. Then, we made experiments and analyzed the results. Our distributed system gave much better results than Interpro Pfam, PROSITE and ProDom running in a centralized platform. This approach seems to be appropriate and promising for highly demanding computational tools used for biological applications.
Texte intégral:
Disponible
Indice:
LILAS (Amériques)
Sujet Principal:
Systèmes de gestion de bases de données
/
Projet génome humain
/
Biologie informatique
/
Analyse de séquence de protéine
/
Bases de données de protéines
Limites du sujet:
Humains
langue:
Anglais
Texte intégral:
Genet. mol. res. (Online)
Thème du journal:
Biologie moléculaire
/
Génétique
Année:
2005
Type:
Article
Pays d'affiliation:
Brésil
Institution/Pays d'affiliation:
EMBRAPA Recursos Genéticos e Biotecnologia/BR
/
Universidade de Brasília/BR
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