Study on transcriptome characteristic of Angelica Sinensis Radix by Illumina HiSeq 2000 sequencing / 中草药

ABSTRACT

Objective: To explore the hereditary basis of secondary metabolic biosynthesis in Angelica Sinensis Radix (the roots of Angelica Sinensis) and identify the gene sequence of active substance in Angelica Sinensis Radix. Methods: The samples of Angelica Sinensis Radix were collected in Min County of Gansu Province and were identified by relevant experts. Total RNA was extracted from the heads and tails of Angelica sinensis. Sequencing library was constructed and qualified. Then, Double-ended sequencing was accomplished in Illumina HiSeq 2000 device. Transcriptome characteristic of Angelica Sinensis Radix was analyzed by relevant bioinformatics. Results: We obtained 66 431 540 primitive sequences of Angelica Sinensis Radix by Illumina HiSeq 2000 high-flux sequencing and annotated 30 432 unigenes by bioinformatics. The important economic crop distributed in Angelica Sinensis Radix sequences are Vitis vinifera, Ricinus communis, Populus trichocarpa, Glycine max, Medicago truncatula, Arabidopsis thaliana, and Nicotiana tabacum through comparing with 939 species sequences in Uniprot protein library. It was suggested that 127, 69, 70, and 94 unigenes expressed in Angelica Sinensis Radix were respectively mapped to the pathway of phenylpropanoid biosynthesis, N-glycan biosynthesis, flavonoid biosynthesis, and folate biosynthesis. These unigenes are related to the biosynthesis of important active substances, for example ferulic acid, polysaccharide, flavonoid, and folic acid in Angelica Sinensis Radix. Conclusion: Unigenes explored in the present paper are involved in the biosynthesis of major pharmaceutical substances, suggesting the genetic basis of Angelica Sinensis Radix.