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1.
Environ Sci Pollut Res Int ; 2022 Sep 16.
Article in English | MEDLINE | ID: mdl-36109484

ABSTRACT

This research is concerned with performing computational fluid dynamics (CFD) simulations to investigate the air flow and dust deposition behavior around a ground-mounted solar PV panel. The discrete phase model (DPM) is adopted to model the gas-solid flow. The influence of the wind speed, the dust particle size, and the dust material on the dust deposition rate was investigated based on the environment of Cairo, Egypt. The wind speeds range between 1 and 11.5 m/s with an average of 3.7 m/s. It is found that increasing the wind speed decreases the dust deposition rate. For wind speeds higher than 2 m/s, it is found that increasing the dust particle diameter or the dust density increases the dust deposition rate. For wind speeds lower than 2 m/s, it is found that there is a critical particle size before which increasing the dust density causes dust deposition rate to increase and after which increasing the dust density decreases the dust deposition. The maximum percentage of deposition rate equals 10.8% and occurs for the dolomite dust material at a wind speed of 2 m/s and particles diameter of 150 µm.

2.
Br J Oral Maxillofac Surg ; 58(1): 102-104, 2020 01.
Article in English | MEDLINE | ID: mdl-31601436

ABSTRACT

Dentigerous cysts in young adults may compromise the natural evolution of the dentition and can be treated surgically or non-surgically. We report the minimally-invasive treatment of dentigerous cysts in two young patients using a modified Hawley plate to avoid traumatic injury to anatomical structures, with up to four years' follow up.


Subject(s)
Dentigerous Cyst/surgery , Oral Surgical Procedures , Bone Plates , Child , Humans , Young Adult
3.
J Fr Ophtalmol ; 42(3): 295-302, 2019 Mar.
Article in French | MEDLINE | ID: mdl-30857801

ABSTRACT

Penetrating keratoplasty is the most commonly performed tissue transplant in the world. However, its success depends on the health of the ocular surface and the intact immune privilege of the eye. In the absence of these two conditions, corneal transplants have an increased failure rate and result in corneal blindness. For more than two hundred years, researchers have been trying to find the best design of the artificial cornea in order to address these cases of severe corneal blindness. Despite previous difficulties, interest in the field has recently been revived, and considerable progress has been made over the last 20 years, to the point where the keratoprosthesis is now considered a primary procedure for some indications and is no longer always a surgery of last resort. In this review, we describe the global and personal experience with Boston keratoprosthesis type 1. It is a relatively new treatment for severe corneal blindness in the context of multiple failed corneal transplants and high-risk conditions. In the last decade, changes in the design, surgical technique, and postoperative management have increased the success rate and popularity of the Boston keratoprosthesis and decreased its complications substantially, making it a safe and effective alternative for certain corneal pathologies. However, some complications persist and require management to improve the visual prognosis of patients with corneal blindness.


Subject(s)
Corneal Diseases/surgery , Corneal Transplantation/methods , Keratoplasty, Penetrating/methods , Blindness/epidemiology , Blindness/etiology , Blindness/surgery , Corneal Diseases/complications , Corneal Diseases/epidemiology , Humans , Postoperative Complications/epidemiology , Postoperative Complications/etiology , Prostheses and Implants , Prosthesis Implantation/methods
4.
Lab Chip ; 16(19): 3804-3814, 2016 09 21.
Article in English | MEDLINE | ID: mdl-27722504

ABSTRACT

We recently developed capillaric circuits (CCs) - advanced capillary microfluidic devices assembled from capillary fluidic elements in a modular manner similar to the design of electric circuits (Safavieh & Juncker, Lab Chip, 2013, 13, 4180-4189). CCs choreograph liquid delivery operations according to pre-programmed capillary pressure differences with minimal user intervention. CCs were thought to require high-precision micron-scale features manufactured by conventional photolithography, which is slow and expensive. Here we present CCs manufactured rapidly and inexpensively using 3D-printed molds. Molds for CCs were fabricated with a benchtop 3D-printer, poly(dimethylsiloxane) replicas were made, and fluidic functionality was verified with aqueous solutions. We established design rules for CCs by a combination of modelling and experimentation. The functionality and reliability of trigger valves - an essential fluidic element that stops one liquid until flow is triggered by a second liquid - was tested for different geometries and different solutions. Trigger valves with geometries up to 80-fold larger than cleanroom-fabricated ones were found to function reliably. We designed retention burst valves that encode sequential liquid delivery using capillary pressure differences encoded by systematically varied heights and widths. Using an electrical circuit analogue of the CC, we established design rules to ensure strictly sequential liquid delivery. CCs autonomously delivered eight liquids in a pre-determined sequence in <7 min. Taken together, our results demonstrate that 3D-printing lowers the bar for other researchers to access capillary microfluidic valves and CCs for autonomous liquid delivery with applications in diagnostics, research and education.

5.
Eye (Lond) ; 27(6): 767-9, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23579405

ABSTRACT

PURPOSE: To ascertain the feasibility of pars plana vitrectomy (PPV) through a permanent Boston Keratoprosthesis type 1 (KPro) without the use of a temporary KPro. METHODS: A retrospective interventional case series. Eyes implanted with Boston KPro type 1 between 2008 and 2011 requiring PPV for vitreoretinal complications were included. Feasibility of PPV through the KPro, its anatomical and functional success were studied. RESULTS: Five out of 70 patients required PPV for vitreoretinal complications post-KPro surgery resulting in an incidence of 7%. PPV was feasible through the Boston KPro with no deleterious effects on the corneal carrier or the KPro itself. Repeat PPV was necessary in some cases. Although anatomical repair of the vitreoretinal complications was achieved in most cases, post PPV visual acuity remained poor in the majority. CONCLUSION: Our study suggests that although PPV through the Boston KPro is a viable approach for vitreoretinal disease repair, visual rehabilitation remains poor.


Subject(s)
Prostheses and Implants , Retinal Diseases/surgery , Vitrectomy/methods , Feasibility Studies , Female , Humans , Male , Middle Aged , Prosthesis Implantation/adverse effects , Retrospective Studies , Visual Acuity
6.
J Biol Regul Homeost Agents ; 26(4): 597-606, 2012.
Article in English | MEDLINE | ID: mdl-23241110

ABSTRACT

Pro-inflammatory cytokines, i.e., IL-1 mediate the inflammatory response and are genetically regulated in periodontal diseases. Strong association was found between the composite genotype allele 2 of IL-1ß+3954 and IL-1α-889 and severe chronic periodontitis. The aim of this study is to determine the prevalence of IL-1ß+3954 and IL-1α-889 polymorphism in a group of Lebanese individuals of homogeneous ethnicity and the possible association between genotype positive individuals and the severity of periodontal disease. One hundred and fifty-seven patients aged 53.29±13.13 years participated in the study. Subjects were classified as follows: 1) healthy subjects with no attachment loss >1mm and no clinical signs of gingival or periodontal inflammation; 2) diseased subjects with mild periodontitis (less than 15‰ of global periodontal bone loss); 3) subjects with moderate periodontitis (less than 4 interproximal sites with bone loss = or >50 percent and mean bone loss between 15 and 30%); 4) subjects with severe periodontitis (more than 7 interproximal sites with >50% bone loss and mean bone loss >35‰). Blood samples were taken and analyzed for polymorphism in the IL-1α gene at position +4845 and in the IL-1beta gene at position +3953. Statistical analysis was performed using chi-square test, Fisher Exact test, and ANOVA followed by Bonferroni multiple comparisons. The prevalence of genotype-positive subjects was 52.3‰ in the healthy control group and 42 ‰ in the diseased group. Positive genotype heterozygous of allele 1 and 2 for IL-1ß+3954 and IL-1α-889 did not represent in this study a major risk for chronic periodontitis (p=0.590). Only subjects homozygous for allele2 of the IL-1ß+3954 and IL-1α-889 were significantly more at risk for severe periodontitis with OR of 51.42.


Subject(s)
Chronic Periodontitis/genetics , Interleukin-1alpha/genetics , Interleukin-1beta/genetics , Polymorphism, Genetic , Adult , Aged , Aged, 80 and over , Female , Genotype , Humans , Male , Middle Aged
7.
J Cataract Refract Surg ; 27(10): 1560-6, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11687352

ABSTRACT

PURPOSE: To evaluate the incidence, associations, and visual outcomes in patients with diffuse lamellar keratitis (DLK) after laser in situ keratomileusis (LASIK). SETTING: University-based refractive surgery center, Boston, Massachusetts, USA. METHODS: This retrospective review comprised 2711 eyes that had LASIK between September 1996 and September 1999. All eyes that developed DLK after LASIK were included. They were divided into type I DLK (center sparing) or type II DLK (center involved) and then subdivided into A (sporadic-DLK not diagnosed in other patients treated on the same day) or B (cluster-other patients identified with DLK). Type IA corresponded to center sparing, sporadic; type IB, center sparing, cluster; type IIA, center involved, sporadic; and type IIB, center involved, cluster. The main outcome measures were incidence of DLK after LASIK, time to diagnosis, time to resolution, and changes in best spectacle-corrected visual acuity (BSCVA). Unpaired t tests were used for statistical analyses. RESULTS: Thirty-six eyes (1.3%) developed DLK. Type I occurred in 58.3% of cases (type IA, n = 18; type IB, n = 3) and type II, in 41.7% (type IIA, n = 10; type IIB, n = 5). The mean time to diagnosis was not statistically significantly different between type I (1.8 days) and type II (1.1 days). Fourteen eyes (38.9%) developed DLK after an epithelial defect, representing an odds ratio of 13 times. The association with an epithelial defect was statistically significantly greater with type I (11/21 eyes, 52.4%) than with type II (3/15 eyes, 20.0%; P =.05). The mean time to resolution was 3.5 days in type I (type IA = 3.6 days; type IB = 2.7 days). This was significantly shorter than in type II, which had a mean time to resolution of 12.1 days (type IIA = 9.3 days; type IIB = 10.2 days) (P =.001). Loss of 2 or more lines of BSCVA occurred in 2 of 5 patients with type IIB and in no patients with types IA, IB, or IIA. CONCLUSIONS: Epithelial defects after LASIK increased the risk of DLK occurrence, especially type I. Type II DLK was associated with a prolonged time to resolution and carried a significantly higher risk of BSCVA loss than type I.


Subject(s)
Keratitis/classification , Keratitis/epidemiology , Prednisolone/analogs & derivatives , Administration, Topical , Adult , Anti-Inflammatory Agents/therapeutic use , Female , Glucocorticoids , Humans , Incidence , Keratitis/drug therapy , Keratitis/etiology , Keratomileusis, Laser In Situ/adverse effects , Male , Middle Aged , Myopia/surgery , Prednisolone/therapeutic use , Retrospective Studies , Time Factors , Visual Acuity
8.
Biochemistry ; 40(35): 10542-9, 2001 Sep 04.
Article in English | MEDLINE | ID: mdl-11523996

ABSTRACT

The role of prenylation in the interaction of Rho-family small GTPases with their GTPase activating proteins (GAPs) was investigated. Prenylated and nonprenylated small GTPases were expressed in Sf9 insect cells and Escherichia coli, respectively. Nucleotide binding to and hydrolysis by prenylated and nonprenylated proteins were identical, but three major differences were observed in their reactions with GAPs. (1) Membrane-associated GAPs accelerate GTP hydrolysis only on prenylated Rac1 and RhoA, but they are inactive on the nonprenylated form of these proteins. The difference is independent of the presence of detergents. In contrast to Rac1 and RhoA, nonprenylated Cdc42 is able to interact with membrane-localized GAPs. (2) Full-length p50RhoGAP and p190RhoGAP react less intensely with nonprenylated Rac1 than with the prenylated protein, whereas no difference was observed in the reaction of isolated GAP domains of either p50RhoGAP or Bcr with the different types of Rac1. (3) Fluoride exerts a significant inhibitory effect only on the interaction of prenylated Rac1 with the isolated GAP domains of p50RhoGAP or Bcr. The effect of fluoride is not influenced by addition or chelation of Al(3+). This is the first detailed study demonstrating that prenylation of the small GTPase is an important factor in determining its reaction with GAPs. It is suggested that both intramolecular interactions and membrane targeting of GAP proteins represent potential mechanisms regulating Rac signaling.


Subject(s)
GTP Phosphohydrolases/metabolism , GTPase-Activating Proteins/metabolism , Protein Prenylation , rac GTP-Binding Proteins/metabolism , Enzyme Activation , Fluorides/pharmacology , Humans , In Vitro Techniques , Membrane Proteins/metabolism , Neutrophils/metabolism , Recombinant Proteins/metabolism , Subcellular Fractions , rho GTP-Binding Proteins/metabolism
9.
Biochemistry ; 40(34): 10007-13, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11513578

ABSTRACT

A heterodimer of prenylated Rac1 and Rho GDP dissociation inhibitor was purified and found to be competent in NADPH oxidase activation. Small angle neutron scattering experiments confirmed a 1:1 stoichiometry. The crystal structure of the Rac1-RhoGDI complex was determined at 2.7 A resolution. In this complex in which Rac1 is bound to GDP, the switch I region of Rac1 is in the GDP conformation whereas the switch II region resembles that of a GTP-bound GTPase. Two types of interaction between RhoGTPases and RhoGDI were investigated. The lipid-protein interaction between the geranylgeranyl moiety of Rac1 and RhoGDI resulted in numerous structural changes in the core of RhoGDI. The interactions between Rac1 and RhoGDI occur through hydrogen bonds which involve a number of residues of Rac1, namely, Tyr64(Rac), Arg66(Rac), His103(Rac), and His104(Rac), conserved within the Rho family and localized in the switch II region or in its close neighborhood. Moreover, in the switch II region of Rac1, hydrophobic interactions involving Leu67(Rac) and Leu70(Rac) contribute to the stability of the Rac1-RhoGDI complex. Inhibition of the GDP-GTP exchange in Rac1 upon binding to RhoGDI partly results from interaction of Thr35(Rac) with Asp45(GDI). In the Rac1-RhoGDI complex, the accessibility of the effector loops of Rac1 probably accounts for the ability of the Rac1-RhoGDI complex to activate the NADPH oxidase.


Subject(s)
Guanine Nucleotide Dissociation Inhibitors/chemistry , Guanine Nucleotide Dissociation Inhibitors/metabolism , NADPH Oxidases/metabolism , rac1 GTP-Binding Protein/chemistry , rac1 GTP-Binding Protein/metabolism , Amino Acid Sequence , Animals , Binding Sites , Crystallography, X-Ray , Dimerization , Enzyme Activation , Guanosine Diphosphate/chemistry , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/chemistry , Guanosine Triphosphate/metabolism , Hydrogen Bonding , Models, Molecular , Molecular Conformation , Molecular Sequence Data , Neutrons , Oxidation-Reduction , Protein Conformation , Protein Prenylation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Scattering, Radiation , Sequence Alignment , Sequence Homology, Amino Acid , Spodoptera , Transfection , rho GTP-Binding Proteins/metabolism , rho-Specific Guanine Nucleotide Dissociation Inhibitors
10.
Biochemistry ; 40(34): 10014-22, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11513579

ABSTRACT

The low molecular weight GTP binding protein Rac is essential to the activation of the NADPH oxidase complex, involved in pathogen killing during phagocytosis. In resting cells, Rac exists as a heterodimeric complex with Rho GDP dissociation inhibitor (Rho-GDI). Two types of interactions exist between Rac and Rho-GDI: a protein-lipid interaction, implicating the polyisoprene of the GTPase, as well as protein-protein interactions. Using the two-hybrid system, we show that nonprenylated Rac1 interacts very weakly with Rho-GDI, pointing to the predominant role of protein-isoprene interaction in complex formation. In the absence of this strong interaction, we demonstrate that three sites of protein-protein interaction, Arg66(Rac)-Leu67(Rac), His103(Rac), and the C-terminal polybasic region Arg183(Rac)-Lys188(Rac), are involved and cooperate in complex formation. When Rac1 mutants are prenylated by expression in insect cells, they all interact with Rho-GDI. Rho-GDI is able to exert an inhibitory effect on the GDP/GTP exchange reaction except in the complex in which Rac1 has a deletion of the polybasic region (Arg183(Rac)-Lys188(Rac)). This complex is, most likely, held together through protein-lipid interaction only. Although able to function as GTPases, the mutants of Rac1 that failed to interact with Rho-GDI also failed to activate the NADPH oxidase in a cell-free assay after loading with GTP. Mutant Leu119(Rac)Gln could both interact with Rho-GDI and activate the NADPH oxidase. The Rac1/Rho-GDI and Rac1(Leu119Gln)/Rho-GDI complexes, in which the GTPases were bound to GDP, were found to activate the oxidase efficiently. These data suggest that Rho-GDI stabilizes Rac in an active conformation, even in the GDP-bound state, and presents it to its effector, the p67phox component of the NADPH oxidase.


Subject(s)
Guanine Nucleotide Dissociation Inhibitors/metabolism , NADPH Oxidases/metabolism , rac1 GTP-Binding Protein/metabolism , rho GTP-Binding Proteins/metabolism , Amino Acid Sequence , Amino Acid Substitution , Animals , Baculoviridae , Cloning, Molecular , Enzyme Activation , Guanine Nucleotide Dissociation Inhibitors/chemistry , Guanosine 5'-O-(3-Thiotriphosphate)/metabolism , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/metabolism , Kinetics , Models, Molecular , Mutagenesis, Site-Directed , Protein Prenylation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Superoxides/metabolism , Transfection , rac1 GTP-Binding Protein/chemistry , rho GTP-Binding Proteins/chemistry , rho-Specific Guanine Nucleotide Dissociation Inhibitors
11.
J Biol Chem ; 276(38): 35909-16, 2001 Sep 21.
Article in English | MEDLINE | ID: mdl-11468292

ABSTRACT

RhoGTPases are negatively regulated by GTPase-activating proteins (GAPs). Here we demonstrate that Drosophila RotundRacGAP is active in vitro on Drac1 and Dcdc42 but not Drho1. Similarly, in yeast, RotundRacGAP interacts specifically with Drac1 and Dcdc42, as well as with their activated V12 forms, showing a particularly strong interaction with Dcdc42V12. In the fly, lowering RotundRacGAP dosage specifically modifies eye defects induced by expressing Drac1 or Dcdc42 but not Drho1, confirming that Drac1 and Dcdc42 are indeed in vivo targets of RotundRacGAP. Furthermore, embryonic-directed expression of either RotundRacGAP, or dominant negative Drac1N17, transgenes induces similar defects in dorsal closure and inhibits Drac1-dependent cytoskeleton assembly at the leading edge. Expression of truncated forms of RotundRacGAP shows that the GAP domain of RotundRacGAP is essential for its function. Unexpectedly, transgenes encoding Drac1N17, Dcdc42N17, or RotundRacGAP do not affect the c-Jun N-terminal kinase-dependent gene expression of decapentaplegic and puckered, indicating that another Drac1-independent signal redundantly activates this pathway. Finally, in a situation where Drac1 is constitutively activated, RotundRacGAP greatly reduces the ectopic expression of decapentaplegic, possibly by negatively regulating Dcdc42.


Subject(s)
Drosophila Proteins , GTPase-Activating Proteins/metabolism , Signal Transduction , rac GTP-Binding Proteins/metabolism , Animals , Base Sequence , DNA Primers , Drosophila melanogaster , Embryo, Nonmammalian/metabolism , GTP-Binding Proteins/genetics , GTP-Binding Proteins/metabolism , GTPase-Activating Proteins/genetics , Gene Expression Regulation, Developmental , Transgenes , rac GTP-Binding Proteins/genetics
12.
Biochimie ; 83(5): 409-14, 2001 May.
Article in English | MEDLINE | ID: mdl-11368848

ABSTRACT

The Rho-GDP dissociation inhibitor (Rho-GDI) was used as bait in a two-hybrid screen of a human leucocyte cDNA library. Most of the isolated cDNAs encoded GTPases of the Rho subfamily: RhoA, B, C, Rac1, 2, CDC42 and RhoG. The newly discovered RhoH interacted very poorly with Rho-GDI. Another protein partner shared a homology with RhoA that points to Asp67(RhoA)-Arg68(RhoA)-Leu69(RhoA) as critical for interaction with Rho-GDI. A second screen with RhoA as bait led to the isolation of GDI only. In order to investigate the relative role of protein-protein and protein-lipid interactions between Rho GTPases and Rho-GDI, CAAX box mutants of RhoA were produced. They were found to interact with Rho-GDI as efficiently as wild type RhoA, indicating that protein-protein interactions alone lead to strong binding of the two proteins. The C-terminal polybasic region of RhoA was also shown to be a site of protein-protein interaction with Rho-GDI.


Subject(s)
Guanine Nucleotide Dissociation Inhibitors/chemistry , Guanine Nucleotide Dissociation Inhibitors/metabolism , rho GTP-Binding Proteins/chemistry , rho GTP-Binding Proteins/metabolism , Amino Acid Sequence , DNA, Complementary/metabolism , Gene Library , Glutathione Transferase/metabolism , Humans , Leukocytes/metabolism , Lipid Metabolism , Molecular Sequence Data , Mutation , Protein Binding , Protein Prenylation , Protein Structure, Tertiary , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Two-Hybrid System Techniques , beta-Galactosidase , rho-Specific Guanine Nucleotide Dissociation Inhibitors
13.
Biochem J ; 355(Pt 3): 851-8, 2001 May 01.
Article in English | MEDLINE | ID: mdl-11311150

ABSTRACT

We have investigated the intracellular localization and molecular identity of Rac-GTPase-activating proteins (Rac-GAPs) in human neutrophils. Immunoblot analysis detected the presence of both p190RhoGAP and Bcr mainly in the cytosol. An overlay assay performed with [gamma-(32)P]GTP-bound Rac revealed dominant GAP activity related to a 50 kDa protein both in the membrane and cytosol. This activity could be identified by Western blotting and immunoprecipitation with specific antibody directed against the GAP domain of p50RhoGAP. Using a semirecombinant or fully purified cell-free activation assay of the Rac-activated enzyme NADPH oxidase, we demonstrated the regulatory effect of both the membrane-localized and soluble GAPs. We suggest that in neutrophil granulocytes Rac-GAPs have redundant function and represent suitable targets for both the up-regulation and down-regulation of the NADPH oxidase.


Subject(s)
Guanine Nucleotide Exchange Factors , NADPH Oxidases/metabolism , Neutrophils/metabolism , ras GTPase-Activating Proteins/metabolism , Animals , Cattle , Cell Membrane/enzymology , Cytosol/enzymology , GTPase-Activating Proteins/metabolism , Humans , In Vitro Techniques , Leukocytes, Mononuclear/metabolism , Neutrophils/cytology , Nuclear Proteins/metabolism , Oxygen/metabolism , Phosphoproteins/metabolism , Precipitin Tests , Protein Prenylation , Repressor Proteins , ras-GRF1
14.
J Biol Chem ; 276(24): 21627-31, 2001 Jun 15.
Article in English | MEDLINE | ID: mdl-11262407

ABSTRACT

Upon activation, the NADPH oxidase from neutrophils produces superoxide anions in response to microbial infection. This enzymatic complex is activated by association of its cytosolic factors p67(phox), p47(phox), and the small G protein Rac with a membrane-associated flavocytochrome b(558). Here we report the crystal structure of the active N-terminal fragment of p67(phox) at 1.8 A resolution, as well as functional studies of p67(phox) mutants. This N-terminal region (residues 1-213) consists mainly of four TPR (tetratricopeptide repeat) motifs in which the C terminus folds back into a hydrophobic groove formed by the TPR domain. The structure is very similar to that of the inactive truncated form of p67(phox) bound to the small G protein Rac previously reported, but differs by the presence of a short C-terminal helix (residues 187-193) that might be part of the activation domain. All p67(phox) mutants responsible for Chronic Granulomatous Disease (CGD), a severe defect of NADPH oxidase function, are localized in the N-terminal region. We investigated two CGD mutations, G78E and A128V. Surprisingly, the A128V CGD mutant is able to fully activate the NADPH oxidase in vitro at 25 degrees C. However, this point mutation represents a temperature-sensitive defect in p67(phox) that explains its phenotype at physiological temperature.


Subject(s)
Granulomatous Disease, Chronic/enzymology , Phosphoproteins/chemistry , Alanine , Amino Acid Substitution , Circular Dichroism , Crystallography, X-Ray , Granulomatous Disease, Chronic/genetics , Humans , Kinetics , Models, Molecular , Mutagenesis, Site-Directed , NADPH Dehydrogenase/chemistry , NADPH Dehydrogenase/metabolism , Neutrophils/enzymology , Peptide Fragments/chemistry , Phosphoproteins/genetics , Phosphoproteins/metabolism , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Repetitive Sequences, Amino Acid
15.
Biochemistry ; 40(10): 3127-33, 2001 Mar 13.
Article in English | MEDLINE | ID: mdl-11258927

ABSTRACT

The NADPH oxidase of phagocytic cells is regulated by the cytosolic factors p47(phox), p67(phox), and p40(phox) as well as by the Rac1-Rho-GDI heterodimer. The regulation is a consequence of protein-protein interactions involving a variety of protein domains that are well characterized in signal transduction. We have studied the behavior of the NADPH oxidase cytosolic factors in solution using small angle neutron scattering and gel filtration. p47(phox), two truncated forms of p47(phox), namely, p47(phox) without its C-terminal end (residues 1-358) and p47(phox) without its N-terminal end (residues 147-390), and p40(phox) were found to be monomeric in solution. The dimeric form of p67(phox) previously observed by gel filtration experiments was confirmed. Our small angle neutron scattering experiments show that p40(phox) binds to the full-length p47(phox) in solution in the absence of phosphorylation. We demonstrated that the C-terminal end of p47(phox) is essential in this interaction. From the comparison of the presence or absence of interaction with various truncated forms of the proteins, we confirmed that the SH3 domain of p40(phox) interacts with the C-terminal proline rich region of p47(phox). The radii of gyration observed for p47(phox) and the truncated forms of p47(phox) (without the C-terminal end or without the N-terminal end) show that all these molecules are elongated and that the N-terminal end of p47(phox) is globular. These results suggest that the role of amphiphiles such as SDS or arachidonic acid or of p47(phox) phosphorylation in the elicitation of NADPH oxidase activation could be to disrupt the p40(phox)-p47(phox) complex rather than to break an intramolecular interaction in p47(phox).


Subject(s)
NADPH Oxidases/metabolism , Neutrophils/enzymology , Peptide Fragments/physiology , Phosphoproteins/metabolism , Phosphoproteins/physiology , Chromatography, Gel , Cytosol/enzymology , Dimerization , HL-60 Cells , Humans , Molecular Weight , Neutrons , Peptide Fragments/genetics , Peptide Fragments/isolation & purification , Peptide Fragments/metabolism , Phosphoproteins/genetics , Phosphoproteins/isolation & purification , Scattering, Radiation , Solutions
16.
Biochimie ; 82(12): 1099-105, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11120351

ABSTRACT

To examine whether molecular similarities exist between the animal and plant Rho GTPase signaling pathways, we have developed a heterologous two-hybrid screening method. By this technique, we have cloned a cDNA encoding a tobacco Rac-like protein able to interact with a mammalian Rho-GDI. In a second screen this tobacco Rac was used as a bait and a tobacco homologue of Rho-GDI was identified. These results show that some components of the animal and plant Rac signaling pathways are similar enough to allow their interaction in an heterologous approach. Moreover these data suggest a similar regulation of Rho GTPases in animals and plants.


Subject(s)
Guanine Nucleotide Dissociation Inhibitors/genetics , Plant Proteins/genetics , Plants, Toxic , Tobacco/genetics , rac GTP-Binding Proteins/genetics , Amino Acid Sequence , Cloning, Molecular , Gene Expression Regulation, Plant , Guanine Nucleotide Dissociation Inhibitors/metabolism , Humans , Molecular Sequence Data , Plant Proteins/metabolism , Sequence Analysis , Sequence Homology, Amino Acid , Signal Transduction , Tobacco/metabolism , Two-Hybrid System Techniques , rac GTP-Binding Proteins/metabolism , rho-Specific Guanine Nucleotide Dissociation Inhibitors
17.
Eur J Biochem ; 262(3): 879-89, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10411652

ABSTRACT

Rho GTPases have two interconvertible forms and two cellular localizations. In their GTP-bound conformation, they bind to the cell membrane and are activated. In the inactive GDP-bound conformation, they associate with a cytosolic protein called GDP dissociation inhibitor (GDI). We previously reported that the RhoA component of the RhoA/Rho-GDI complex was not accessible to the Clostridium botulinum C3 ADP-ribosyl transferase, unless the complex had been incubated with phosphoinositides. We show here that PtdIns, PtdIns4P, PtdIns3,4P2, PtdIns4,5P2 and PtdInsP3 enhance not only the C3-dependent ADP-ribosylation, but also the GDP/GTP exchange in the RhoA component of the prenylated RhoA/Rho-GDI complex. In contrast, in the nonprenylated RhoA/Rho-GDI complex, the levels of ADP-ribosylation and GDP/GTP exchange are of the same order as those measured on free RhoA and are not modified by phosphoinositides. In both cases, phosphoinositides partially opened, but did not fully dissociate the complex. Upon treatment of the prenylated RhoA/Rho-GDI complex with phosphoinositides, a GTP-dependent transfer to neutrophil membranes was evidenced. Using an overlay assay with the prenylated RhoA/Rho-GDI complex pretreated with PtdIns4P and labeled with [alpha32P]GTP, three membrane proteins with molecular masses between 26 and 32 kDa were radiolabeled. We conclude that in the presence of phosphoinositides, the prenylated RhoA/Rho-GDI complex partially opens, which allows RhoA to exchange GDP for GTP. The opened GTP-RhoA/Rho-GDI complex acquires the capacity to target specific membrane proteins.


Subject(s)
GTP-Binding Proteins/metabolism , Guanine Nucleotide Dissociation Inhibitors , Hemiterpenes , Pentanes , Phosphatidylinositols/metabolism , rho GTP-Binding Proteins , Adenosine Diphosphate/metabolism , Butadienes/metabolism , Enzyme Activation , GTP-Binding Proteins/chemistry , Guanosine Triphosphate/metabolism , Humans , Macromolecular Substances , Membrane Proteins/metabolism , Phosphorus Radioisotopes/metabolism , Protein Prenylation , Ribonucleosides/metabolism , rho Guanine Nucleotide Dissociation Inhibitor gamma , rhoA GTP-Binding Protein
18.
J Cell Sci ; 112 ( Pt 4): 503-13, 1999 Feb.
Article in English | MEDLINE | ID: mdl-9914162

ABSTRACT

Ku70, a regulatory component of the DNA-dependent protein kinase, was identified by a yeast two-hybrid screen of a B lymphocyte cDNA library as a partner of p40phox, a regulatory component of the O2--producing NADPH oxidase. Truncated constructs of p40phox and Ku70 were used to map the interacting sites. The 186 C-terminal amino acids (aa) of Ku70 were found to interact with two distinct regions of p40phox, the central core region (aa 50-260) and the C-terminal extremity (aa 260-339). In complementary experiments, it was observed that Ku70 binds to immobilized recombinant p40phox fusion protein and that p40phox and Ku70 from a B lymphocyte cell extract comigrate in successive chromatographies on Q Separose, Superose 12 and hydroxylapatite columns. Moreover, we report that Ku70 and p40phox colocalize in B lymphocytes and in transfected Cos-7 cells. We also show that the two NADPH oxidase activating factors, p47phox and p67phox are substrates for DNA-PK in vitro and that they are present together with p40phox in the nucleus of B cells. These results may help solve the paradox that the phox protein triad, p40phox, p47phox and p67phox, is expressed equally in B lymphocytes and neutrophils, whereas the redox component of the NADPH oxidase, a flavocytochrome b, which is well expressed in neutrophils, is barely detectable in B lymphocytes.


Subject(s)
Antigens, Nuclear , B-Lymphocytes/immunology , B-Lymphocytes/metabolism , DNA Helicases , DNA-Binding Proteins/metabolism , Nuclear Proteins/metabolism , Phosphoproteins/metabolism , Saccharomyces cerevisiae Proteins , Animals , Autoantigens/genetics , Autoantigens/metabolism , Binding Sites/genetics , COS Cells , Cell Nucleus/metabolism , Cytoplasm/metabolism , DNA, Complementary/metabolism , DNA-Activated Protein Kinase , DNA-Binding Proteins/genetics , Fluorescent Antibody Technique , Humans , Ku Autoantigen , NADPH Oxidases , Nuclear Proteins/genetics , Phosphoproteins/genetics , Phosphorylation , Protein Serine-Threonine Kinases/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/genetics , Subcellular Fractions/metabolism , Transfection
19.
Biotechniques ; 22(5): 916-8, 920-2, 1997 May.
Article in English | MEDLINE | ID: mdl-9149875

ABSTRACT

Two-hybrid systems are powerful tools to find new partners for a protein of interest. However, exchange of material between two-hybrid users has been handicapped by the various versions of two-hybrid systems available and by the widely accepted idea that they are not compatible. In the present paper we show that, contrary to the dogma, the most often used two-hybrid systems may be combined by either transformation or mating assays. The protocol to be followed in each case is provided. This will greatly increase the prospects of the growing network of interacting proteins, by reconciling the "two-hybrid systems" and the "interaction trap".


Subject(s)
Protein Multimerization , Protein Serine-Threonine Kinases/genetics , Animals , Bacterial Proteins/genetics , Base Sequence , Casein Kinase II , Chickens/genetics , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Dimerization , Plasmids , Protein Serine-Threonine Kinases/chemistry , Recombinant Fusion Proteins , Saccharomyces cerevisiae/genetics , Serine Endopeptidases/genetics , Transformation, Genetic , Two-Hybrid System Techniques , beta-Galactosidase/genetics
20.
Eur J Biochem ; 239(2): 369-75, 1996 Jul 15.
Article in English | MEDLINE | ID: mdl-8706742

ABSTRACT

The possible mechanism of activation of the NADPH oxidase by fluoride was investigated in the cell-free system. It is shown that the stimulatory effect of fluoride is inhibited by guanosine 5'-O-(2-thiodiphosphate) (GDP[S]) and potentiated by GTP. The effect of fluoride is not additive with GTP[S]. Fluoride activation requires the presence of Mg2+ in millimolar concentration but is independent of Al3+. The activating effect of fluoride is preserved in solubilized membrane extract after removal of the majority of heterotrimeric GTP-binding proteins by immunoadsorption. Fluoride has no direct action either on the nucleotide exchange of GTP hydrolysis of the isolated Rac protein. In contrast, fluoride effectively inhibits Rac-GTPase activity enhanced by a membrane component. In this way, fluoride could prolong the prevalence of Rac in the GTP-bound state and, as a consequence, activate NADPH oxidase. The possibility of the involvement of a membrane-bound Rac GTPase-activating protein activity in the physiological regulation of the enzyme is raised.


Subject(s)
NADH, NADPH Oxidoreductases/blood , Proteins/metabolism , Sodium Fluoride/pharmacology , Animals , Enzyme Activation , GTP-Binding Proteins/isolation & purification , GTP-Binding Proteins/metabolism , GTPase-Activating Proteins , Guanosine 5'-O-(3-Thiotriphosphate)/pharmacology , Guanosine Diphosphate/analogs & derivatives , Guanosine Diphosphate/pharmacology , Guanosine Triphosphate/metabolism , Hydrolysis , Kinetics , NADPH Oxidases , Neutrophils/metabolism , Superoxides/blood , Swine , Thionucleotides/pharmacology , Time Factors
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