Screening druggable targets and predicting therapeutic drugs for COVID-19 via integrated bioinformatics analysis.
Genes Genomics
; 43(1): 55-67, 2021 01.
Article
in English
| MEDLINE | ID: covidwho-1018515
ABSTRACT
BACKGROUND:
Since the outbreak of coronavirus disease 2019 (COVID-19) in China, numerous research institutions have invested in the development of anti-COVID-19 vaccines and screening for efficacious drugs to manage the virus.OBJECTIVE:
To explore the potential targets and therapeutic drugs for the prevention and treatment of COVID-19 through data mining and bioinformatics.METHODS:
We integrated and profoundly analyzed 10 drugs previously assessed to have promising therapeutic potential in COVID-19 management, and have been recommended for clinical trials. To explore the mechanisms by which these drugs may be involved in the treatment of COVID-19, gene-drug interactions were identified using the DGIdb database after which functional enrichment analysis, protein-protein interaction (PPI) network, and miRNA-gene network construction were performed. We adopted the DGIdb database to explore the candidate drugs for COVID-19.RESULTS:
A total of 43 genes associated with the 10 potential COVID-19 drugs were identified. Function enrichment analysis revealed that these genes were mainly enriched in response to other invasions, toll-like receptor pathways, and they play positive roles in the production of cytokines such as IL-6, IL-8, and INF-ß. TNF, TLR3, TLR7, TLR9, and CXCL10 were identified as crucial genes in COVID-19. Through the DGIdb database, we predicted 87 molecules as promising druggable molecules for managing COVID-19.CONCLUSIONS:
Findings from this work may provide new insights into COVID-19 mechanisms and treatments. Further, the already identified candidate drugs may improve the efficiency of pharmaceutical treatment in this rapidly evolving global situation.Keywords
Full text:
Available
Collection:
International databases
Database:
MEDLINE
Main subject:
Antiviral Agents
/
COVID-19
/
COVID-19 Drug Treatment
Type of study:
Prognostic study
/
Reviews
Topics:
Traditional medicine
/
Vaccines
Limits:
Humans
Language:
English
Journal:
Genes Genomics
Year:
2021
Document Type:
Article
Affiliation country:
S13258-020-01021-8
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