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Universal Polymerase Chain Reaction and Antibody Testing Demonstrate Little to No Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 in a Rural Community.
Appa, Ayesha; Takahashi, Saki; Rodriguez-Barraquer, Isabel; Chamie, Gabriel; Sawyer, Aenor; Duarte, Elias; Hakim, Jill; Turcios, Keirstinne; Vinden, Joanna; Janson, Owen; Manglik, Aashish; Peluso, Michael J; Deeks, Steven G; Henrich, Timothy J; Torres, Leonel; Rodgers, Mary; Hackett, John; Chiu, Charles; Havlir, Diane; Greenhouse, Bryan.
  • Appa A; University of California San Francisco, San Francisco, California, USA.
  • Takahashi S; University of California San Francisco, San Francisco, California, USA.
  • Rodriguez-Barraquer I; University of California San Francisco, San Francisco, California, USA.
  • Chamie G; University of California San Francisco, San Francisco, California, USA.
  • Sawyer A; University of California San Francisco, San Francisco, California, USA.
  • Duarte E; University of California San Francisco, San Francisco, California, USA.
  • Hakim J; University of California San Francisco, San Francisco, California, USA.
  • Turcios K; University of California San Francisco, San Francisco, California, USA.
  • Vinden J; University of California Berkeley, Berkeley, California, USA.
  • Janson O; University of California San Francisco, San Francisco, California, USA.
  • Manglik A; University of California San Francisco, San Francisco, California, USA.
  • Peluso MJ; University of California San Francisco, San Francisco, California, USA.
  • Deeks SG; University of California San Francisco, San Francisco, California, USA.
  • Henrich TJ; University of California San Francisco, San Francisco, California, USA.
  • Torres L; University of California San Francisco, San Francisco, California, USA.
  • Rodgers M; Abbott Laboratories, Abbott Park, Illinois, USA.
  • Hackett J; Abbott Laboratories, Abbott Park, Illinois, USA.
  • Chiu C; University of California San Francisco, San Francisco, California, USA.
  • Havlir D; University of California San Francisco, San Francisco, California, USA.
  • Greenhouse B; University of California San Francisco, San Francisco, California, USA.
Open Forum Infect Dis ; 8(1): ofaa531, 2021 Jan.
Article in English | MEDLINE | ID: covidwho-1069285
ABSTRACT

BACKGROUND:

Limited systematic surveillance for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in the early months of the US epidemic curtailed accurate appraisal of transmission intensity. Our objective was to perform case detection of an entire rural community to quantify SARS-CoV-2 transmission using polymerase chain reaction (PCR) and antibody testing.

METHODS:

We conducted a cross-sectional survey of SARS-CoV-2 infection in the rural town of Bolinas, California (population 1620), 4 weeks after shelter-in-place orders. Participants were tested between April 20 and 24, 2020. Prevalence by PCR and seroprevalence from 2 forms of antibody testing were performed in parallel (Abbott ARCHITECT immunoglobulin [Ig]G and in-house IgG enzyme-linked immunosorbent assay).

RESULTS:

Of 1891 participants, 1312 were confirmed Bolinas residents (>80% community ascertainment). Zero participants were PCR positive. Assuming 80% sensitivity, it would have been unlikely to observe these results (P < .05) if there were >3 active infections in the community. Based on antibody results, estimated prevalence of prior infection was 0.16% (95% credible interval [CrI], 0.02%-0.46%). The positive predictive value (PPV) of a positive result on both tests was 99.11% (95% CrI, 95.75%-99.94%), compared with PPV 44.19%-63.32% (95% CrI, 3.25%-98.64%) if 1 test was utilized.

CONCLUSIONS:

Four weeks after shelter-in-place, SARS-CoV-2 infection in a rural Northern California community was extremely rare. In this low-prevalence setting, use of 2 antibody tests increased seroprevalence estimate precision. This was one of the first community-wide studies to successfully implement synchronous PCR and antibody testing, particularly in a rural setting. Widespread testing remains an underpinning of effective disease control in conjunction with consistent uptake of public health measures.
Keywords

Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study / Observational study / Prognostic study / Randomized controlled trials / Systematic review/Meta Analysis Language: English Journal: Open Forum Infect Dis Year: 2021 Document Type: Article Affiliation country: Ofid

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Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study / Observational study / Prognostic study / Randomized controlled trials / Systematic review/Meta Analysis Language: English Journal: Open Forum Infect Dis Year: 2021 Document Type: Article Affiliation country: Ofid