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Current state of diagnostic, screening and surveillance testing methods for COVID-19 from an analytical chemistry point of view.
Martín, Julia; Tena, Noelia; Asuero, Agustin G.
  • Martín J; Departamento de Química Analítica, Escuela Politécnica Superior, Universidad de Sevilla, C/ Virgen de África 7, Sevilla E-41011, Spain.
  • Tena N; Departamento de Química Analítica, Facultad de Farmacia, Universidad de Sevilla, Prof. García González, 2, Sevilla 41012, Spain.
  • Asuero AG; Departamento de Química Analítica, Facultad de Farmacia, Universidad de Sevilla, Prof. García González, 2, Sevilla 41012, Spain.
Microchem J ; 167: 106305, 2021 Aug.
Article in English | MEDLINE | ID: covidwho-1198979
ABSTRACT
Since December 2019, we have been in the battlefield with a new threat to the humanity known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In this review, we describe the four main methods used for diagnosis, screening and/or surveillance of SARS-CoV-2 Real-time reverse transcription polymerase chain reaction (RT-PCR); chest computed tomography (CT); and different complementary alternatives developed in order to obtain rapid results, antigen and antibody detection. All of them compare the highlighting advantages and disadvantages from an analytical point of view. The gold standard method in terms of sensitivity and specificity is the RT-PCR. The different modifications propose to make it more rapid and applicable at point of care (POC) are also presented and discussed. CT images are limited to central hospitals. However, being combined with RT-PCR is the most robust and accurate way to confirm COVID-19 infection. Antibody tests, although unable to provide reliable results on the status of the infection, are suitable for carrying out maximum screening of the population in order to know the immune capacity. More recently, antigen tests, less sensitive than RT-PCR, have been authorized to determine in a quicker way whether the patient is infected at the time of analysis and without the need of specific instruments.
Keywords
2019-nCoV, 2019 novel coronavirus; ACE2, Angiotensin-Converting Enzyme 2; AI, Artificial Intelligence; ALP, Alkaline Phosphatase; ASOs, Antisense Oligonucleotides; Antigen and antibody tests; AuNIs, Gold Nanoislands; AuNPs, Gold Nanoparticles; BSL, Biosecurity Level; CAP, College of American Pathologists; CCD, Charge-Coupled Device; CG, Colloidal Gold; CGIA, Colloidal Gold Immunochromatographic Assay; CLIA, Chemiluminescence Enzyme Immunoassay; CLIA, Clinical Laboratory Improvement Amendments; COVID-19; COVID-19, Coronavirus disease-19; CRISPR, Clustered Regularly Interspaced Short Palindromic Repeats; CT, Chest Computed Tomography; Cas, CRISPR Associate Protein; China CDC, Chinese Center for Disease Control and Prevention; Ct, Cycle Threshold; DETECTR, SARS-CoV-2 DNA Endonuclease-Targeted CRISPR Trans Reporter; DNA, Dexosyrosyribonucleic Acid; E, Envelope protein; ELISA, Enzyme Linked Immunosorbent Assay; EMA, European Medicines Agency; EUA, Emergence Use Authorization; FDA, Food and Drug Administration; FET, Field-Effect Transistor; GISAID, Global Initiative on Sharing All Influenza Data; GeneBank, Genetic sequence data base of the National Institute of Health; ICTV, International Committee on Taxonomy of Viruses; IgA, Immunoglobulins A; IgG, Immunoglobulins G; IgM, Immunoglobulins M; IoMT, Internet of Medical Things; IoT, Internet of Things; LFIA, Lateral Flow Immunochromatographic Assays; LOC, Lab-on-a-Chip; LOD, Limit of detection; LSPR, Localized Surface Plasmon Resonance; M, Membrane protein; MERS-CoV, Middle East Respiratory Syndrome Coronavirus; MNP, Magnetic Nanoparticle; MS, Mass spectrometry; N, Nucleocapsid protein; NER, Naked Eye Readout; NGM, Next Generation Molecular; NGS, Next Generation Sequencing; NIH, National Institute of Health; NSPs, Nonstructural Proteins; Net, Neural Network; ORF, Open Reading Frame; OSN, One Step Single-tube Nested; PDMS, Polydimethylsiloxane; POC, Point of Care; PPT, Plasmonic Photothermal; QD, Quantum Dot; R0, Basic reproductive number; RBD, Receptor-binding domain; RNA, Ribonucleic Acid; RNaseH, Ribonuclease H; RT, Reverse Transcriptase; RT-LAMP, Reverse Transcription Loop-Mediated Isothermal Amplification; RT-PCR, Real-Time Reverse Transcription Polymerase Chain Reaction; RT-PCR, chest computerized tomography; RdRp, RNA-Dependent RNA Polymerase; S, Spike protein; SARS-CoV-2; SARS-CoV-2, Severe Acute Respiratory Syndrome Coronavirus 2; SERS, Surface Enhanced Raman Spectroscopy; SHERLOCK, Specific High Sensitivity Enzymatic Reporter UnLOCKing; STOPCovid, SHERLOCK Testing on One Pot; SVM, Support Vector Machine; SiO2@Ag, Complete silver nanoparticle shell coated on silica core; US CDC, US Centers for Disease Control and Prevention; VOC, Variant of Concern; VTM, Viral Transport Medium; WGS, Whole Genome Sequencing; WHO, World Health Organization; aM, Attomolar; dNTPs, Nucleotides; dPCR, Digital PCR; ddPCR, Droplet digital PCR; fM, Femtomolar; m-RNA, Messenger Ribonucleic Acid; nM, Nanomolar; pM, Picomolar; pfu, Plaque-forming unit; rN, Recombinant nucleocapsid protein antigen; rS, Recombinant Spike protein antigen; ssRNA, Single-Stranded Positive-Sense RNA

Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study Language: English Journal: Microchem J Year: 2021 Document Type: Article Affiliation country: J.microc.2021.106305

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Full text: Available Collection: International databases Database: MEDLINE Type of study: Diagnostic study Language: English Journal: Microchem J Year: 2021 Document Type: Article Affiliation country: J.microc.2021.106305