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Rapid response to emerging biomedical challenges and threats.
Grabowski, Marek; Macnar, Joanna M; Cymborowski, Marcin; Cooper, David R; Shabalin, Ivan G; Gilski, Miroslaw; Brzezinski, Dariusz; Kowiel, Marcin; Dauter, Zbigniew; Rupp, Bernhard; Wlodawer, Alexander; Jaskolski, Mariusz; Minor, Wladek.
  • Grabowski M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Macnar JM; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Cymborowski M; College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Warsaw, Poland.
  • Cooper DR; Faculty of Chemistry, Biological and Chemical Research Center, University of Warsaw, Warsaw, Poland.
  • Shabalin IG; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Gilski M; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Brzezinski D; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Kowiel M; Department of Crystallography, Faculty of Chemistry, A. Mickiewicz University, Poznan, Poland.
  • Dauter Z; Center for Biocrystallographic Research, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.
  • Rupp B; Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
  • Wlodawer A; Center for Biocrystallographic Research, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.
  • Jaskolski M; Institute of Computing Science, Poznan University of Technology, Poznan, Poland.
  • Minor W; Center for Biocrystallographic Research, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.
IUCrJ ; 8(Pt 3): 395-407, 2021 May 01.
Article in English | MEDLINE | ID: covidwho-1218066
ABSTRACT
As part of the global mobilization to combat the present pandemic, almost 100 000 COVID-19-related papers have been published and nearly a thousand models of macromolecules encoded by SARS-CoV-2 have been deposited in the Protein Data Bank within less than a year. The avalanche of new structural data has given rise to multiple resources dedicated to assessing the correctness and quality of structural data and models. Here, an approach to evaluate the massive amounts of such data using the resource https//covid19.bioreproducibility.org is described, which offers a template that could be used in large-scale initiatives undertaken in response to future biomedical crises. Broader use of the described methodology could considerably curtail information noise and significantly improve the reproducibility of biomedical research.
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Full text: Available Collection: International databases Database: MEDLINE Type of study: Experimental Studies Language: English Journal: IUCrJ Year: 2021 Document Type: Article Affiliation country: S2052252521003018

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Full text: Available Collection: International databases Database: MEDLINE Type of study: Experimental Studies Language: English Journal: IUCrJ Year: 2021 Document Type: Article Affiliation country: S2052252521003018