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Pharmacogenomic landscape of COVID-19 therapies from Indian population genomes.
Sahana, S; Sivadas, Ambily; Mangla, Mohit; Jain, Abhinav; Bhoyar, Rahul C; Pandhare, Kavita; Mishra, Anushree; Sharma, Disha; Imran, Mohamed; Senthivel, Vigneshwar; Divakar, Mohit Kumar; Rophina, Mercy; Jolly, Bani; Batra, Arushi; Sharma, Sumit; Siwach, Sanjay; Jadhao, Arun G; Palande, Nikhil V; Jha, Ganga Nath; Ashrafi, Nishat; Mishra, Prashant Kumar; Vidhya, A K; Jain, Suman; Dash, Debasis; Kumar, Nachimuthu Senthil; Vanlallawma, Andrew; Sarma, Ranjan Jyoti; Chhakchhuak, Lalchhandama; Kalyanaraman, Shantaraman; Mahadevan, Radha; Kandasamy, Sunitha; Devi, Pabitha; Rajagopal, Raskin Erusan; Ramya, J Ezhil; Devi, P Nirmala; Bajaj, Anjali; Gupta, Vishu; Mathew, Samatha; Goswami, Sangam; Prakash, Savinitha; Joshi, Kandarp; Kumla, Meya; Sreedevi, S; Gajjar, Devarshi; Soraisham, Ronibala; Yadav, Rohit; Devi, Yumnam Silla; Gupta, Aayush; Mukerji, Mitali; Ramalingam, Sivaprakash.
  • Sahana S; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Sivadas A; Division of Nutrition, St. John's Research Institute, St. John's National Academy of Health Sciences, Bangalore, India.
  • Mangla M; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Jain A; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Bhoyar RC; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Pandhare K; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Mishra A; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Sharma D; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Imran M; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Senthivel V; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Divakar MK; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Rophina M; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Jolly B; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Batra A; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Sharma S; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Siwach S; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Jadhao AG; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Palande NV; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Jha GN; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Ashrafi N; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Mishra PK; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Vidhya AK; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Jain S; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Dash D; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Kumar NS; Department of Zoology, RTM Nagpur University, Nagpur, Maharashtra, 440033, India.
  • Vanlallawma A; Department of Zoology, Shri Mathuradas Mohota College of Science, Nagpur, Maharashtra, 440009, India.
  • Sarma RJ; Department of Anthropology, Vinoba Bhave University, Hazaribag, Jharkhand, 825301, India.
  • Chhakchhuak L; Department of Anthropology, Vinoba Bhave University, Hazaribag, Jharkhand, 825301, India.
  • Kalyanaraman S; Department of Biotechnology, Vinoba Bhave University, Hazaribag, Jharkhand, 825301, India.
  • Mahadevan R; Department of Biochemistry, Dr. Kongu Science & Art College, Erode, Tamil Nadu, 638107, India.
  • Kandasamy S; Thalassemia & Sickle cell Society, Hyderabad, Telangana, 500052, India.
  • Devi P; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Rajagopal RE; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Ramya JE; Department of Biotechnology, Mizoram University, Aizawl, Mizoram, 796004, India.
  • Devi PN; Department of Biotechnology, Mizoram University, Aizawl, Mizoram, 796004, India.
  • Bajaj A; Department of Biotechnology, Mizoram University, Aizawl, Mizoram, 796004, India.
  • Gupta V; Department of Pathology, Civil Hospital Aizawl, Mizoram, 796001, India.
  • Mathew S; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Goswami S; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Prakash S; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Joshi K; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Kumla M; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Sreedevi S; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Gajjar D; TVMC, Tirunelveli Medical College, Tirunelveli, Tamil Nadu, 627011, India.
  • Soraisham R; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Yadav R; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Devi YS; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Gupta A; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
  • Mukerji M; CSIR Institute of Genomics & Integrative Biology, Mathura Road, New Delhi, 110025, India.
  • Ramalingam S; Academy of Scientific & Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, 201002, India.
Pharmacogenomics ; 22(10): 603-618, 2021 07.
Article in English | MEDLINE | ID: covidwho-1278319
ABSTRACT

Aim:

Numerous drugs are being widely prescribed for COVID-19 treatment without any direct evidence for the drug safety/efficacy in patients across diverse ethnic populations. Materials &

methods:

We analyzed whole genomes of 1029 Indian individuals (IndiGen) to understand the extent of drug-gene (pharmacogenetic), drug-drug and drug-drug-gene interactions associated with COVID-19 therapy in the Indian population.

Results:

We identified 30 clinically significant pharmacogenetic variants and 73 predicted deleterious pharmacogenetic variants. COVID-19-associated pharmacogenes were substantially overlapped with those of metabolic disorder therapeutics. CYP3A4, ABCB1 and ALB are the most shared pharmacogenes. Fifteen COVID-19 therapeutics were predicted as likely drug-drug interaction candidates when used with four CYP inhibitor drugs.

Conclusion:

Our findings provide actionable insights for future validation studies and improved clinical decisions for COVID-19 therapy in Indians.
Subject(s)
Keywords

Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 / COVID-19 Drug Treatment Type of study: Prognostic study Topics: Variants Limits: Humans Country/Region as subject: Asia Language: English Journal: Pharmacogenomics Journal subject: Pharmacology / Genetics, Medical Year: 2021 Document Type: Article Affiliation country: Pgs-2021-0028

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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 / COVID-19 Drug Treatment Type of study: Prognostic study Topics: Variants Limits: Humans Country/Region as subject: Asia Language: English Journal: Pharmacogenomics Journal subject: Pharmacology / Genetics, Medical Year: 2021 Document Type: Article Affiliation country: Pgs-2021-0028