CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.
Genome Biol
; 22(1): 196, 2021 07 01.
Article
in English
| MEDLINE | ID: covidwho-1295478
ABSTRACT
In response to the ongoing SARS-CoV-2 pandemic in the UK, the COVID-19 Genomics UK (COG-UK) consortium was formed to rapidly sequence SARS-CoV-2 genomes as part of a national-scale genomic surveillance strategy. The network consists of universities, academic institutes, regional sequencing centres and the four UK Public Health Agencies. We describe the development and deployment of CLIMB-COVID, an encompassing digital infrastructure to address the challenge of collecting and integrating both genomic sequencing data and sample-associated metadata produced across the COG-UK network.
Full text:
Available
Collection:
International databases
Database:
MEDLINE
Main subject:
Genomics
/
Cloud Computing
/
SARS-CoV-2
Type of study:
Observational study
Limits:
Humans
Country/Region as subject:
Europa
Language:
English
Journal:
Genome Biol
Journal subject:
Molecular Biology
/
Genetics
Year:
2021
Document Type:
Article
Affiliation country:
S13059-021-02395-y
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