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Hospital length of stay for COVID-19 patients: Data-driven methods for forward planning.
Vekaria, Bindu; Overton, Christopher; Wisniowski, Arkadiusz; Ahmad, Shazaad; Aparicio-Castro, Andrea; Curran-Sebastian, Jacob; Eddleston, Jane; Hanley, Neil A; House, Thomas; Kim, Jihye; Olsen, Wendy; Pampaka, Maria; Pellis, Lorenzo; Ruiz, Diego Perez; Schofield, John; Shryane, Nick; Elliot, Mark J.
  • Vekaria B; Department of Mathematics, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. bindu.vekaria@manchester.ac.uk.
  • Overton C; Division of Informatics, Imaging and Data Science, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Oxford Road, Manchester, M13 9PL, UK. bindu.vekaria@manchester.ac.uk.
  • Wisniowski A; Clinical Data Science Unit, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WU, UK. bindu.vekaria@manchester.ac.uk.
  • Ahmad S; Department of Mathematics, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. christopher.overton@manchester.ac.uk.
  • Aparicio-Castro A; Department of Mathematics, University of Liverpool, Peach Street, Liverpool, L69 7ZL, UK. christopher.overton@manchester.ac.uk.
  • Curran-Sebastian J; Department of Social Statistics, School of Social Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, UK. a.wisniowski@manchester.ac.uk.
  • Eddleston J; Department of Virology, Manchester Medical Microbiology Partnership, Manchester Foundation Trust, Manchester Academic Health Sciences Centre, Oxford Road, Manchester, M13 9WU, UK.
  • Hanley NA; Department of Social Statistics, School of Social Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
  • House T; Department of Mathematics, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
  • Kim J; Clinical Data Science Unit, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WU, UK.
  • Olsen W; Clinical Data Science Unit, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WU, UK.
  • Pampaka M; Division of Diabetes, Endocrinology & Gastroenterology, School of Medical Sciences, Faculty of Biology, Medicine & Health, University of Manchester, Oxford Road, Manchester, M13 9PT, UK.
  • Pellis L; Clinical Data Science Unit, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WU, UK.
  • Ruiz DP; Department of Mathematics, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
  • Schofield J; IBM Research, Hartree Centre, Daresbury, UK.
  • Shryane N; Clinical Data Science Unit, Manchester University NHS Foundation Trust, Oxford Road, Manchester, M13 9WU, UK.
  • Elliot MJ; Department of Social Statistics, School of Social Sciences, University of Manchester, Oxford Road, Manchester, M13 9PL, UK.
BMC Infect Dis ; 21(1): 700, 2021 Jul 22.
Article in English | MEDLINE | ID: covidwho-1322927
ABSTRACT

BACKGROUND:

Predicting hospital length of stay (LoS) for patients with COVID-19 infection is essential to ensure that adequate bed capacity can be provided without unnecessarily restricting care for patients with other conditions. Here, we demonstrate the utility of three complementary methods for predicting LoS using UK national- and hospital-level data.

METHOD:

On a national scale, relevant patients were identified from the COVID-19 Hospitalisation in England Surveillance System (CHESS) reports. An Accelerated Failure Time (AFT) survival model and a truncation corrected method (TC), both with underlying Weibull distributions, were fitted to the data to estimate LoS from hospital admission date to an outcome (death or discharge) and from hospital admission date to Intensive Care Unit (ICU) admission date. In a second approach we fit a multi-state (MS) survival model to data directly from the Manchester University NHS Foundation Trust (MFT). We develop a planning tool that uses LoS estimates from these models to predict bed occupancy.

RESULTS:

All methods produced similar overall estimates of LoS for overall hospital stay, given a patient is not admitted to ICU (8.4, 9.1 and 8.0 days for AFT, TC and MS, respectively). Estimates differ more significantly between the local and national level when considering ICU. National estimates for ICU LoS from AFT and TC were 12.4 and 13.4 days, whereas in local data the MS method produced estimates of 18.9 days.

CONCLUSIONS:

Given the complexity and partiality of different data sources and the rapidly evolving nature of the COVID-19 pandemic, it is most appropriate to use multiple analysis methods on multiple datasets. The AFT method accounts for censored cases, but does not allow for simultaneous consideration of different outcomes. The TC method does not include censored cases, instead correcting for truncation in the data, but does consider these different outcomes. The MS method can model complex pathways to different outcomes whilst accounting for censoring, but cannot handle non-random case missingness. Overall, we conclude that data-driven modelling approaches of LoS using these methods is useful in epidemic planning and management, and should be considered for widespread adoption throughout healthcare systems internationally where similar data resources exist.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 / Intensive Care Units / Length of Stay Type of study: Observational study / Prognostic study / Randomized controlled trials Limits: Aged / Female / Humans / Male / Middle aged Country/Region as subject: Europa Language: English Journal: BMC Infect Dis Journal subject: Communicable Diseases Year: 2021 Document Type: Article Affiliation country: S12879-021-06371-6

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Full text: Available Collection: International databases Database: MEDLINE Main subject: COVID-19 / Intensive Care Units / Length of Stay Type of study: Observational study / Prognostic study / Randomized controlled trials Limits: Aged / Female / Humans / Male / Middle aged Country/Region as subject: Europa Language: English Journal: BMC Infect Dis Journal subject: Communicable Diseases Year: 2021 Document Type: Article Affiliation country: S12879-021-06371-6