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Toward a systematic conflict resolution framework for ontologies.
Keet, C Maria; Grütter, Rolf.
  • Keet CM; Department of Computer Science, University of Cape Town, 18 University Avenue, Cape Town, 7700, South Africa.
  • Grütter R; Swiss Federal Research Institute WSL, Zürcherstrasse 111, Birmensdorf, CH-8903, Switzerland. rolf.gruetter@wsl.ch.
J Biomed Semantics ; 12(1): 15, 2021 08 09.
Article in English | MEDLINE | ID: covidwho-1350153
ABSTRACT

BACKGROUND:

The ontology authoring step in ontology development involves having to make choices about what subject domain knowledge to include. This may concern sorting out ontological differences and making choices between conflicting axioms due to limitations in the logic or the subject domain semantics. Examples are dealing with different foundational ontologies in ontology alignment and OWL 2 DL's transitive object property versus a qualified cardinality constraint. Such conflicts have to be resolved somehow. However, only isolated and fragmented guidance for doing so is available, which therefore results in ad hoc decision-making that may not be the best choice or forgotten about later.

RESULTS:

This work aims to address this by taking steps towards a framework to deal with the various types of modeling conflicts through meaning negotiation and conflict resolution in a systematic way. It proposes an initial library of common conflicts, a conflict set, typical steps toward resolution, and the software availability and requirements needed for it. The approach was evaluated with an actual case of domain knowledge usage in the context of epizootic disease outbreak, being avian influenza, and running examples with COVID-19 ontologies.

CONCLUSIONS:

The evaluation demonstrated the potential and feasibility of a conflict resolution framework for ontologies.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Semantics / Information Storage and Retrieval / Vocabulary, Controlled / Computational Biology / Biological Ontologies / Semantic Web Type of study: Experimental Studies / Observational study / Systematic review/Meta Analysis Limits: Humans Language: English Journal: J Biomed Semantics Year: 2021 Document Type: Article Affiliation country: S13326-021-00246-0

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Semantics / Information Storage and Retrieval / Vocabulary, Controlled / Computational Biology / Biological Ontologies / Semantic Web Type of study: Experimental Studies / Observational study / Systematic review/Meta Analysis Limits: Humans Language: English Journal: J Biomed Semantics Year: 2021 Document Type: Article Affiliation country: S13326-021-00246-0