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Targeted pandemic containment through identifying local contact network bottlenecks.
Yang, Shenghao; Senapati, Priyabrata; Wang, Di; Bauch, Chris T; Fountoulakis, Kimon.
  • Yang S; School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.
  • Senapati P; School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.
  • Wang D; Google Research, Mountain View, California, United States.
  • Bauch CT; Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada.
  • Fountoulakis K; School of Computer Science, University of Waterloo, Waterloo, Ontario, Canada.
PLoS Comput Biol ; 17(8): e1009351, 2021 08.
Article in English | MEDLINE | ID: covidwho-1378132
ABSTRACT
Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts-between individuals or between population centres-are increasingly used for these purposes. Real-world contact networks are rich in structural features that influence infection transmission, such as tightly-knit local communities that are weakly connected to one another. In this paper, we propose a new flow-based edge-betweenness centrality method for detecting bottleneck edges that connect nodes in contact networks. In particular, we utilize convex optimization formulations based on the idea of diffusion with p-norm network flow. Using simulation models of COVID-19 transmission through real network data at both individual and county levels, we demonstrate that targeting bottleneck edges identified by the proposed method reduces the number of infected cases by up to 10% more than state-of-the-art edge-betweenness methods. Furthermore, the proposed method is orders of magnitude faster than existing methods.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: Computer Simulation / COVID-19 / Models, Biological Type of study: Observational study Limits: Humans Country/Region as subject: North America Language: English Journal: PLoS Comput Biol Journal subject: Biology / Medical Informatics Year: 2021 Document Type: Article Affiliation country: Journal.pcbi.1009351

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Full text: Available Collection: International databases Database: MEDLINE Main subject: Computer Simulation / COVID-19 / Models, Biological Type of study: Observational study Limits: Humans Country/Region as subject: North America Language: English Journal: PLoS Comput Biol Journal subject: Biology / Medical Informatics Year: 2021 Document Type: Article Affiliation country: Journal.pcbi.1009351