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Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains.
Bartas, Martin; Goswami, Pratik; Lexa, Matej; Cerven, Jirí; Volná, Adriana; Fojta, Miroslav; Brázda, Václav; Pecinka, Petr.
  • Bartas M; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Goswami P; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
  • Lexa M; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic.
  • Cerven J; Faculty of Informatics, Masaryk University, Brno, Czech Republic.
  • Volná A; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Fojta M; Department of Physics, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Brázda V; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
  • Pecinka P; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Brief Bioinform ; 22(5)2021 09 02.
Article in English | MEDLINE | ID: covidwho-1387714
ABSTRACT
In a recently published paper, we have found that SARS-CoV-2 hot-spot mutations are significantly associated with inverted repeat loci and CG dinucleotides. However, fast-spreading strains with new mutations (so-called mink farm mutations, England mutations and Japan mutations) have been recently described. We used the new datasets to check the positioning of mutation sites in genomes of the new SARS-CoV-2 strains. Using an open-access Palindrome analyzer tool, we found mutations in these new strains to be significantly enriched in inverted repeat loci.
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Full text: Available Collection: International databases Database: MEDLINE Main subject: SARS-CoV-2 / Mutation Limits: Humans Language: English Journal subject: Biology / Medical Informatics Year: 2021 Document Type: Article Affiliation country: BIB

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Full text: Available Collection: International databases Database: MEDLINE Main subject: SARS-CoV-2 / Mutation Limits: Humans Language: English Journal subject: Biology / Medical Informatics Year: 2021 Document Type: Article Affiliation country: BIB