CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes.
Bioinformatics
; 2020 Dec 21.
Article
in English
| MEDLINE | ID: covidwho-2293365
ABSTRACT
SUMMARY:
While over 150 thousand genomic sequences are currently available through dedicated repositories, ad hoc methods for the functional annotation of SARS-CoV-2 genomes do not harness all currently available resources for the annotation of functionally relevant genomic sites. Here we present CorGAT, a novel tool for the functional annotation of SARS-CoV-2 genomic variants. By comparisons with other state of the art methods we demonstrate that, by providing a more comprehensive and rich annotation, our method can facilitate the identification of evolutionary patterns in the genome of SARS-CoV-2.AVAILABILITY:
Galaxy http//corgat.cloud.ba.infn.it/galaxy; software https//github.com/matteo14c/CorGAT/tree/Revision_V1; docker https//hub.docker.com/r/laniakeacloud/galaxy_corgat. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Full text:
Available
Collection:
International databases
Database:
MEDLINE
Topics:
Variants
Language:
English
Journal subject:
Medical Informatics
Year:
2020
Document Type:
Article
Affiliation country:
Bioinformatics
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